2P76 | pdb_00002p76

Crystal structure of a Glycerophosphodiester Phosphodiesterase from Staphylococcus aureus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d2p76h1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	PLC-like phosphodiesterases	automated matches	automated matches	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
H	d2p76h2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
G	d2p76g1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	PLC-like phosphodiesterases	automated matches	automated matches	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
G	d2p76g2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
F	d2p76f1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	PLC-like phosphodiesterases	automated matches	automated matches	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
F	d2p76f2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
E	d2p76e1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	PLC-like phosphodiesterases	automated matches	automated matches	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
E	d2p76e2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
D	d2p76d1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	PLC-like phosphodiesterases	automated matches	automated matches	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
D	d2p76d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
C	d2p76c1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	PLC-like phosphodiesterases	automated matches	automated matches	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
C	d2p76c2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
B	d2p76b1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	PLC-like phosphodiesterases	automated matches	automated matches	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
B	d2p76b2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
A	d2p76a1	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	PLC-like phosphodiesterases	automated matches	automated matches	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)
A	d2p76a2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Staphylococcus aureus subsp. aureus N315 ) [TaxId: 158879 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Glycerophosphoryl diester phosphodiesterase	8074001	4000418	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PLC-like phosphodiesterases	8074002	3000615	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	GDPD	e2p76H1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: GDPD	ECOD (1.6)
G	GDPD	e2p76G1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: GDPD	ECOD (1.6)
F	GDPD	e2p76F1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: GDPD	ECOD (1.6)
E	GDPD	e2p76E1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: GDPD	ECOD (1.6)
D	GDPD	e2p76D1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: GDPD	ECOD (1.6)
C	GDPD	e2p76C1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: GDPD	ECOD (1.6)
B	GDPD	e2p76B1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: GDPD	ECOD (1.6)
A	GDPD	e2p76A1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: GDPD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
G	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
F	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
E	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
D	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
C	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
B	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
A	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.