2ZUT
Crystal structure of Galacto-N-biose/Lacto-N-biose I phosphorylase in complex with GalNAc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8054008 | 3001405 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8054009 | 3001528 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | (Trans)glycosidases | 8054007 | 3000313 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8054008 | 3001405 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | (Trans)glycosidases | 8054007 | 3000313 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8054009 | 3001528 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8054009 | 3001528 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | (Trans)glycosidases | 8054007 | 3000313 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8054008 | 3001405 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8054008 | 3001405 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | (Trans)glycosidases | 8054007 | 3000313 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Glycosyl hydrolase domain-like | 8054009 | 3001528 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | LBP_C | e2zutD2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: LBP_C | ECOD (1.6) |
D | Lact_bio_phlase | e2zutD1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Lact_bio_phlase | ECOD (1.6) |
D | LBP_M | e2zutD3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: LBP_M | ECOD (1.6) |
A | LBP_C | e2zutA3 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: LBP_C | ECOD (1.6) |
A | Lact_bio_phlase | e2zutA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Lact_bio_phlase | ECOD (1.6) |
A | LBP_M | e2zutA2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: LBP_M | ECOD (1.6) |
B | LBP_C | e2zutB1 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: LBP_C | ECOD (1.6) |
B | Lact_bio_phlase | e2zutB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Lact_bio_phlase | ECOD (1.6) |
B | LBP_M | e2zutB3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: LBP_M | ECOD (1.6) |
C | LBP_C | e2zutC2 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: LBP_C | ECOD (1.6) |
C | Lact_bio_phlase | e2zutC1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Lact_bio_phlase | ECOD (1.6) |
C | LBP_M | e2zutC3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: LBP_M | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17385 | Lacto-N-biose phosphorylase central domain (LBP_M) | Lacto-N-biose phosphorylase central domain | The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (EC:2.4.1.211), unlike either glycoside hydrolases or glyc ... | Domain | |
PF17386 | Lacto-N-biose phosphorylase C-terminal domain (LBP_C) | Lacto-N-biose phosphorylase C-terminal domain | The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (EC:2.4.1.211), unlike either glycoside hydrolases or glyc ... | Domain | |
PF09508 | Lacto-N-biose phosphorylase N-terminal TIM barrel domain (Lact_bio_phlase) | Lacto-N-biose phosphorylase N-terminal TIM barrel domain | The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (EC:2.4.1.211), unlike either glycoside hydrolases or glyc ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Lacto-N-biose phosphorylase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR029062 | Class I glutamine amidotransferase-like | Homologous Superfamily | |
IPR035080 | Lacto-N-biose phosphorylase-like, N-terminal TIM barrel domain | Domain | |
IPR035356 | Lacto-N-biose phosphorylase, C-terminal domain | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR035363 | Lacto-N-biose phosphorylase, central domain | Domain | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily | |
IPR012711 | Lacto-N-biose phosphorylase/D-galactosyl-beta-1->4-L-rhamnose phosphorylase | Family |