2FUG
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 1] | SCOP2 Family | Nqo1C-terminal domain-like | 8028961 | 4001259 | SCOP2 (2022-06-29) |
A [auth 1] | SCOP2 Family | Nqo1 FMN-binding domain-like | 8028962 | 4002455 | SCOP2 (2022-06-29) |
A [auth 1] | SCOP2 Family | Nqo1 middle domain-like | 8028963 | 4003440 | SCOP2 (2022-06-29) |
A [auth 1] | SCOP2 Superfamily | Nqo1C-terminal domain-like | 8041340 | 3001171 | SCOP2 (2022-06-29) |
A [auth 1] | SCOP2 Superfamily | Nqo1 FMN-binding domain-like | 8041341 | 3001265 | SCOP2 (2022-06-29) |
A [auth 1] | SCOP2 Superfamily | Nqo1 middle domain-like | 8041342 | 3000871 | SCOP2 (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Nqo1C-terminal domain-like | 8041340 | 3001171 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Nqo1 FMN-binding domain-like | 8041341 | 3001265 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Nqo1 middle domain-like | 8041342 | 3000871 | SCOP2B (2022-06-29) |
Q [auth J] | SCOP2B Superfamily | Nqo1C-terminal domain-like | 8041340 | 3001171 | SCOP2B (2022-06-29) |
Q [auth J] | SCOP2B Superfamily | Nqo1 FMN-binding domain-like | 8041341 | 3001265 | SCOP2B (2022-06-29) |
Q [auth J] | SCOP2B Superfamily | Nqo1 middle domain-like | 8041342 | 3000871 | SCOP2B (2022-06-29) |
Y [auth S] | SCOP2B Superfamily | Nqo1C-terminal domain-like | 8041340 | 3001171 | SCOP2B (2022-06-29) |
Y [auth S] | SCOP2B Superfamily | Nqo1 middle domain-like | 8041342 | 3000871 | SCOP2B (2022-06-29) |
Y [auth S] | SCOP2B Superfamily | Nqo1 FMN-binding domain-like | 8041341 | 3001265 | SCOP2B (2022-06-29) |
B [auth 2] | SCOP2 Family | NQO2-like | 8028965 | 4002945 | SCOP2 (2022-06-29) |
B [auth 2] | SCOP2 Superfamily | Thioredoxin-like | 8041344 | 3000031 | SCOP2 (2022-06-29) |
J [auth B] | SCOP2B Superfamily | Thioredoxin-like | 8041344 | 3000031 | SCOP2B (2022-06-29) |
R [auth K] | SCOP2B Superfamily | Thioredoxin-like | 8041344 | 3000031 | SCOP2B (2022-06-29) |
Z [auth T] | SCOP2B Superfamily | Thioredoxin-like | 8041344 | 3000031 | SCOP2B (2022-06-29) |
AA [auth U] | SCOP2B Superfamily | ADC-like | 8041345 | 3001132 | SCOP2B (2022-06-29) |
AA [auth U] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8041347 | 3000113 | SCOP2B (2022-06-29) |
AA [auth U] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041348 | 3000020 | SCOP2B (2022-06-29) |
AA [auth U] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8041346 | 3001453 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2 Family | Formate dehydrogenase/DMSO reductase, C-terminal domain | 8028966 | 4002360 | SCOP2 (2022-06-29) |
C [auth 3] | SCOP2 Family | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8028967 | 4000801 | SCOP2 (2022-06-29) |
C [auth 3] | SCOP2 Family | 2Fe-2S ferredoxin domains from multidomain proteins | 8028968 | 4000241 | SCOP2 (2022-06-29) |
C [auth 3] | SCOP2 Family | Ferredoxin domains from multidomain proteins | 8028969 | 4000021 | SCOP2 (2022-06-29) |
C [auth 3] | SCOP2 Superfamily | ADC-like | 8041345 | 3001132 | SCOP2 (2022-06-29) |
C [auth 3] | SCOP2 Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8041346 | 3001453 | SCOP2 (2022-06-29) |
C [auth 3] | SCOP2 Superfamily | 2Fe-2S ferredoxin-like | 8041347 | 3000113 | SCOP2 (2022-06-29) |
C [auth 3] | SCOP2 Superfamily | 4Fe-4S ferredoxins | 8041348 | 3000020 | SCOP2 (2022-06-29) |
K [auth C] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8041346 | 3001453 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8041347 | 3000113 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041348 | 3000020 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | ADC-like | 8041345 | 3001132 | SCOP2B (2022-06-29) |
S [auth L] | SCOP2B Superfamily | ADC-like | 8041345 | 3001132 | SCOP2B (2022-06-29) |
S [auth L] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8041346 | 3001453 | SCOP2B (2022-06-29) |
S [auth L] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041348 | 3000020 | SCOP2B (2022-06-29) |
S [auth L] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8041347 | 3000113 | SCOP2B (2022-06-29) |
BA [auth V] | SCOP2B Superfamily | HydB/Nqo4-like | 8041349 | 3001849 | SCOP2B (2022-06-29) |
D [auth 4] | SCOP2 Family | Nqo4-like | 8028970 | 4000433 | SCOP2 (2022-06-29) |
D [auth 4] | SCOP2 Superfamily | HydB/Nqo4-like | 8041349 | 3001849 | SCOP2 (2022-06-29) |
L [auth D] | SCOP2B Superfamily | HydB/Nqo4-like | 8041349 | 3001849 | SCOP2B (2022-06-29) |
T [auth M] | SCOP2B Superfamily | HydB/Nqo4-like | 8041349 | 3001849 | SCOP2B (2022-06-29) |
CA [auth W] | SCOP2B Superfamily | Nqo5-like | 8041351 | 3001071 | SCOP2B (2022-06-29) |
E [auth 5] | SCOP2 Family | Nqo5-like | 8028972 | 4003578 | SCOP2 (2022-06-29) |
E [auth 5] | SCOP2 Superfamily | Nqo5-like | 8041351 | 3001071 | SCOP2 (2022-06-29) |
M [auth E] | SCOP2B Superfamily | Nqo5-like | 8041351 | 3001071 | SCOP2B (2022-06-29) |
U [auth N] | SCOP2B Superfamily | Nqo5-like | 8041351 | 3001071 | SCOP2B (2022-06-29) |
DA [auth X] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8041352 | 3002291 | SCOP2B (2022-06-29) |
F [auth 6] | SCOP2 Family | Nq06/HydA N-terminal domain-like | 8028973 | 4007641 | SCOP2 (2022-06-29) |
F [auth 6] | SCOP2 Superfamily | Nqo6/HydA N-terminal domain-like | 8041352 | 3002291 | SCOP2 (2022-06-29) |
N [auth F] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8041352 | 3002291 | SCOP2B (2022-06-29) |
V [auth O] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8041352 | 3002291 | SCOP2B (2022-06-29) |
EA [auth Y] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041354 | 3000020 | SCOP2B (2022-06-29) |
G [auth 9] | SCOP2 Family | Ferredoxin domains from multidomain proteins | 8028975 | 4000021 | SCOP2 (2022-06-29) |
G [auth 9] | SCOP2 Superfamily | 4Fe-4S ferredoxins | 8041354 | 3000020 | SCOP2 (2022-06-29) |
O [auth G] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041354 | 3000020 | SCOP2B (2022-06-29) |
W [auth P] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041354 | 3000020 | SCOP2B (2022-06-29) |
FA [auth Z] | SCOP2B Superfamily | Frataxin/Nqo15-like | 8041353 | 3001840 | SCOP2B (2022-06-29) |
H [auth 7] | SCOP2 Family | Nqo15-like | 8028974 | 4003855 | SCOP2 (2022-06-29) |
H [auth 7] | SCOP2 Superfamily | Frataxin/Nqo15-like | 8041353 | 3001840 | SCOP2 (2022-06-29) |
P [auth H] | SCOP2B Superfamily | Frataxin/Nqo15-like | 8041353 | 3001840 | SCOP2B (2022-06-29) |
X [auth Q] | SCOP2B Superfamily | Frataxin/Nqo15-like | 8041353 | 3001840 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | NADH_4Fe-4S | e2fug11 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: NADH_4Fe-4S | ECOD (1.6) |
A [auth 1] | SLBB | e2fug12 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: SLBB | ECOD (1.6) |
A [auth 1] | Complex1_51K | e2fug13 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: Complex1_51K | ECOD (1.6) |
I [auth A] | NADH_4Fe-4S | e2fugA1 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: NADH_4Fe-4S | ECOD (1.6) |
I [auth A] | SLBB | e2fugA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: SLBB | ECOD (1.6) |
I [auth A] | Complex1_51K | e2fugA3 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: Complex1_51K | ECOD (1.6) |
Q [auth J] | NADH_4Fe-4S | e2fugJ1 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: NADH_4Fe-4S | ECOD (1.6) |
Q [auth J] | SLBB | e2fugJ2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: SLBB | ECOD (1.6) |
Q [auth J] | Complex1_51K | e2fugJ3 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: Complex1_51K | ECOD (1.6) |
Y [auth S] | NADH_4Fe-4S | e2fugS1 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: NADH_4Fe-4S | ECOD (1.6) |
Y [auth S] | SLBB | e2fugS2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: SLBB | ECOD (1.6) |
Y [auth S] | Complex1_51K | e2fugS3 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: Complex1_51K | ECOD (1.6) |
B [auth 2] | 2Fe-2S_thioredx_N | e2fug22 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: 2Fe-2S_thioredx_N | ECOD (1.6) |
B [auth 2] | 2Fe-2S_thioredx_C | e2fug23 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: 2Fe-2S_thioredx_C | ECOD (1.6) |
J [auth B] | 2Fe-2S_thioredx_N | e2fugB2 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: 2Fe-2S_thioredx_N | ECOD (1.6) |
J [auth B] | 2Fe-2S_thioredx_C | e2fugB1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: 2Fe-2S_thioredx_C | ECOD (1.6) |
R [auth K] | 2Fe-2S_thioredx_N | e2fugK2 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: 2Fe-2S_thioredx_N | ECOD (1.6) |
R [auth K] | 2Fe-2S_thioredx_C | e2fugK1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: 2Fe-2S_thioredx_C | ECOD (1.6) |
Z [auth T] | 2Fe-2S_thioredx_N | e2fugT2 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: 2Fe-2S_thioredx_N | ECOD (1.6) |
Z [auth T] | 2Fe-2S_thioredx_C | e2fugT1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: 2Fe-2S_thioredx_C | ECOD (1.6) |
AA [auth U] | Molydop_binding | e2fugU8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
AA [auth U] | PRK09129 | e2fugU6 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PRK09129 | ECOD (1.6) |
AA [auth U] | Fer2_4 | e2fugU1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_4 | ECOD (1.6) |
AA [auth U] | Molybdop_Fe4S4 | e2fugU4 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4 | ECOD (1.6) |
AA [auth U] | Molybdopterin_2nd | e2fugU3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
AA [auth U] | NuoG_2nd | e2fugU7 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: NuoG_2nd | ECOD (1.6) |
AA [auth U] | NADH-G_4Fe-4S_3 | e2fugU9 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: NADH-G_4Fe-4S_3 | ECOD (1.6) |
C [auth 3] | Molydop_binding | e2fug31 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
C [auth 3] | PRK09129 | e2fug33 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PRK09129 | ECOD (1.6) |
C [auth 3] | Fer2_4 | e2fug34 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_4 | ECOD (1.6) |
C [auth 3] | Molybdop_Fe4S4 | e2fug36 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4 | ECOD (1.6) |
C [auth 3] | Molybdopterin_2nd | e2fug37 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
C [auth 3] | NuoG_2nd | e2fug38 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: NuoG_2nd | ECOD (1.6) |
C [auth 3] | NADH-G_4Fe-4S_3 | e2fug32 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: NADH-G_4Fe-4S_3 | ECOD (1.6) |
K [auth C] | Molydop_binding | e2fugC3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
K [auth C] | PRK09129 | e2fugC7 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PRK09129 | ECOD (1.6) |
K [auth C] | Fer2_4 | e2fugC5 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_4 | ECOD (1.6) |
K [auth C] | Molybdop_Fe4S4 | e2fugC1 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4 | ECOD (1.6) |
K [auth C] | Molybdopterin_2nd | e2fugC2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
K [auth C] | NuoG_2nd | e2fugC4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: NuoG_2nd | ECOD (1.6) |
K [auth C] | NADH-G_4Fe-4S_3 | e2fugC6 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: NADH-G_4Fe-4S_3 | ECOD (1.6) |
S [auth L] | Molydop_binding | e2fugL3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
S [auth L] | PRK09129 | e2fugL2 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PRK09129 | ECOD (1.6) |
S [auth L] | Fer2_4 | e2fugL7 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_4 | ECOD (1.6) |
S [auth L] | Molybdop_Fe4S4 | e2fugL6 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4 | ECOD (1.6) |
S [auth L] | Molybdopterin_2nd | e2fugL8 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
S [auth L] | NuoG_2nd | e2fugL4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: NuoG_2nd | ECOD (1.6) |
S [auth L] | NADH-G_4Fe-4S_3 | e2fugL5 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: NADH-G_4Fe-4S_3 | ECOD (1.6) |
BA [auth V] | Complex1_49kDa_1st | e2fugV1 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
BA [auth V] | NuoD | e2fugV2 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
BA [auth V] | Complex1_49kDa_2nd | e2fugV3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
D [auth 4] | Complex1_49kDa_1st | e2fug41 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
D [auth 4] | NuoD | e2fug42 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
D [auth 4] | Complex1_49kDa_2nd | e2fug43 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
L [auth D] | Complex1_49kDa_1st | e2fugD1 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
L [auth D] | NuoD | e2fugD2 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
L [auth D] | Complex1_49kDa_2nd | e2fugD3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
T [auth M] | Complex1_49kDa_1st | e2fugM1 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
T [auth M] | NuoD | e2fugM2 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
T [auth M] | Complex1_49kDa_2nd | e2fugM3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
CA [auth W] | Complex1_30kDa | e2fugW1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
E [auth 5] | Complex1_30kDa | e2fug51 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
M [auth E] | Complex1_30kDa | e2fugE1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
U [auth N] | Complex1_30kDa | e2fugN1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
DA [auth X] | Oxidored_q6 | e2fugX1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
F [auth 6] | Oxidored_q6 | e2fug61 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
N [auth F] | Oxidored_q6 | e2fugF1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
V [auth O] | Oxidored_q6 | e2fugO1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
EA [auth Y] | Fer4_21_1 | e2fugY1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
G [auth 9] | Fer4_21_1 | e2fug91 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
O [auth G] | Fer4_21_1 | e2fugG1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
W [auth P] | Fer4_21_1 | e2fugP1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
FA [auth Z] | NADH_Oxid_Nqo15 | e2fugZ1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: NADH_Oxid_Nqo15 | ECOD (1.6) |
H [auth 7] | NADH_Oxid_Nqo15 | e2fug71 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: NADH_Oxid_Nqo15 | ECOD (1.6) |
P [auth H] | NADH_Oxid_Nqo15 | e2fugH1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: NADH_Oxid_Nqo15 | ECOD (1.6) |
X [auth Q] | NADH_Oxid_Nqo15 | e2fugQ1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: NADH_Oxid_Nqo15 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 1], I [auth A], Q [auth J], Y [auth S] | PF10531 | SLBB domain (SLBB) | SLBB domain | - | Domain |
A [auth 1], I [auth A], Q [auth J], Y [auth S] | PF22461 | SLBB domain (SLBB_2) | SLBB domain | This entry represents a set of SLBB domains [5]. | Domain |
A [auth 1], I [auth A], Q [auth J], Y [auth S] | PF01512 | Respiratory-chain NADH dehydrogenase 51 Kd subunit (Complex1_51K) | Respiratory-chain NADH dehydrogenase 51 Kd subunit | - | Family |
A [auth 1], I [auth A], Q [auth J], Y [auth S] | PF10589 | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S) | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | - | Domain |
B [auth 2], J [auth B], R [auth K], Z [auth T] | PF01257 | Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx) | Thioredoxin-like [2Fe-2S] ferredoxin | - | Family |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF01568 | Molydopterin dinucleotide binding domain (Molydop_binding) | Molydopterin dinucleotide binding domain | This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entir ... | Domain |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF04879 | Molybdopterin oxidoreductase Fe4S4 domain (Molybdop_Fe4S4) | Molybdopterin oxidoreductase Fe4S4 domain | This domain is found in formate dehydrogenase H for which the structure is known. This first domain (residues 1 to 60) of PDB:1aa6 is an Fe4S4 cluster just below the protein surface [1]. | Domain |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | - | Family |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF00111 | 2Fe-2S iron-sulfur cluster binding domain (Fer2) | 2Fe-2S iron-sulfur cluster binding domain | - | Domain |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF22117 | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain (Nqo3_Fer4) | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain | NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contain ... | Domain |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF10588 | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3) | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | - | Domain |
BA [auth V], D [auth 4], L [auth D], T [auth M] | PF00346 | Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa) | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | - | Family |
CA [auth W], E [auth 5], M [auth E], U [auth N] | PF00329 | Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa) | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | - | Family |
DA [auth X], F [auth 6], N [auth F], V [auth O] | PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6) | NADH ubiquinone oxidoreductase, 20 Kd subunit | - | Family |
EA [auth Y], G [auth 9], O [auth G], W [auth P] | PF00037 | 4Fe-4S binding domain (Fer4) | 4Fe-4S binding domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. | Domain |
FA [auth Z], H [auth 7], P [auth H], X [auth Q] | PF11497 | NADH-quinone oxidoreductase chain 15 (NADH_Oxid_Nqo15) | NADH-quinone oxidoreductase chain 15 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Electron Transport Chain Complexes: Complex I | Complex I soluble domain, oxidized (4 mol/ASU) |