3CWC | pdb_00003cwc

Crystal structure of putative glycerate kinase 2 from Salmonella typhimurium LT2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3cwca1	Alpha and beta proteins (a/b)	Glycerate kinase I	Glycerate kinase I	automated matches	automated matches	Salmonella typhimurium LT2 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
A	d3cwca2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Salmonella typhimurium LT2 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
B	d3cwcb1	Alpha and beta proteins (a/b)	Glycerate kinase I	Glycerate kinase I	automated matches	automated matches	Salmonella typhimurium LT2 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)
B	d3cwcb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Salmonella typhimurium LT2 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ) [TaxId: 99287 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Glycerate kinase I	8082298	3001118	SCOP2B (2022-06-29)
B	SCOP2 Family	Glycerate kinase I	8082297	4002336	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Glycerate kinase I	8082298	3001118	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Gly_kinase_2nd	e3cwcA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Glycerate kinase I (Pfam 02595) domain I (From Topology)	T: Glycerate kinase I (Pfam 02595) domain I	F: Gly_kinase_2nd	ECOD (1.6)
A	Gly_kinase_1st	e3cwcA2	A: a/b three-layered sandwiches	X: Glycerate kinase I (Pfam 02595) domain II (From Topology)	H: Glycerate kinase I (Pfam 02595) domain II (From Topology)	T: Glycerate kinase I (Pfam 02595) domain II	F: Gly_kinase_1st	ECOD (1.6)
B	Gly_kinase_2nd	e3cwcB2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Glycerate kinase I (Pfam 02595) domain I (From Topology)	T: Glycerate kinase I (Pfam 02595) domain I	F: Gly_kinase_2nd	ECOD (1.6)
B	Gly_kinase_1st	e3cwcB1	A: a/b three-layered sandwiches	X: Glycerate kinase I (Pfam 02595) domain II (From Topology)	H: Glycerate kinase I (Pfam 02595) domain II (From Topology)	T: Glycerate kinase I (Pfam 02595) domain II	F: Gly_kinase_1st	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.10350	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycerate kinase	CATH (4.3.0)
A	3.90.1510.10	Alpha Beta	Alpha-Beta Complex	Glycerate kinase, domain 2	Glycerate kinase, domain 2	CATH (4.3.0)
B	3.40.50.10350	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Glycerate kinase	CATH (4.3.0)
B	3.90.1510.10	Alpha Beta	Alpha-Beta Complex	Glycerate kinase, domain 2	Glycerate kinase, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02595	Glycerate kinase family (Gly_kinase)	Glycerate kinase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Putative glycerate kinase 2	kinase activity transferase activity catalytic activity glycerate kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	phosphorylation phosphate-containing compound metabolic process small molecule metabolic process metabolic process cellular process organic acid metabolic process organic acid phosphorylation phosphorus metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR004381	Glycerate kinase	Family
A, B	IPR018193	Glycerate kinase, flavodoxin-like fold	Homologous Superfamily
A, B	IPR018197	Glycerate kinase, restriction-enzyme-like fold	Homologous Superfamily
A, B	IPR036129	Glycerate kinase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.