3OJ0 | pdb_00003oj0

Crystal structure of glutamyl-tRNA reductase from Thermoplasma volcanium (nucleotide binding domain)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	OCD_Mu_crystall_C	e3oj0A1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: OCD_Mu_crystall_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01488	Shikimate / quinate 5-dehydrogenase (Shikimate_DH)	Shikimate / quinate 5-dehydrogenase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Glutamyl-tRNA reductase	binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding NADP binding small molecule binding oxidoreductase activity catalytic activity, acting on RNA oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity, acting on a nucleic acid glutamyl-tRNA reductase activity catalytic activity, acting on a tRNA binding nucleoside phosphate binding purine nucleotide binding adenyl nucleotide binding nucleotide binding heterocyclic compound binding NADP binding small molecule binding oxidoreductase activity catalytic activity, acting on RNA oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity, acting on a nucleic acid glutamyl-tRNA reductase activity catalytic activity, acting on a tRNA catalytic activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	heme metabolic process pigment metabolic process porphyrin-containing compound biosynthetic process heme biosynthetic process oxoacid metabolic process protoporphyrinogen IX metabolic process pigment biosynthetic process amino acid metabolic process organic acid metabolic process alpha-amino acid metabolic process glutamine family amino acid metabolic process tetrapyrrole biosynthetic process from glutamate tetrapyrrole biosynthetic process glutamate metabolic process heme metabolic process pigment metabolic process porphyrin-containing compound biosynthetic process heme biosynthetic process oxoacid metabolic process protoporphyrinogen IX metabolic process pigment biosynthetic process amino acid metabolic process organic acid metabolic process alpha-amino acid metabolic process glutamine family amino acid metabolic process tetrapyrrole biosynthetic process from glutamate tetrapyrrole biosynthetic process glutamate metabolic process small molecule metabolic process porphyrin-containing compound metabolic process protoporphyrinogen IX biosynthetic process from glutamate tetrapyrrole metabolic process dicarboxylic acid metabolic process carboxylic acid metabolic process primary metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process protoporphyrinogen IX biosynthetic process biosynthetic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A	IPR018214	Glutamyl-tRNA reductase, conserved site	Conserved Site
A	IPR006151	Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase	Domain
A	IPR036343	Glutamyl-tRNA reductase, N-terminal domain superfamily	Homologous Superfamily
A	IPR015895	Glutamyl-tRNA reductase, N-terminal	Domain
A	IPR015896	Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain	Domain
A	IPR000343	Glutamyl-tRNA reductase	Family
A	IPR036453	Glutamyl tRNA-reductase dimerization domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.