3VXD | pdb_00003vxd

Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3vxda_	All alpha proteins	alpha/alpha toroid	Six-hairpin glycosidases	automated matches	automated matches	(Streptococcus agalactiae NEM316 ) [TaxId: 211110 ],	SCOPe (2.08)
B	d3vxdb_	All alpha proteins	alpha/alpha toroid	Six-hairpin glycosidases	automated matches	automated matches	(Streptococcus agalactiae NEM316 ) [TaxId: 211110 ],	SCOPe (2.08)
D	d3vxdd_	All alpha proteins	alpha/alpha toroid	Six-hairpin glycosidases	automated matches	automated matches	(Streptococcus agalactiae NEM316 ) [TaxId: 211110 ],	SCOPe (2.08)
C	d3vxdc_	All alpha proteins	alpha/alpha toroid	Six-hairpin glycosidases	automated matches	automated matches	(Streptococcus agalactiae NEM316 ) [TaxId: 211110 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Six-hairpin glycosidases	8089102	3000970	SCOP2B (2022-06-29)
B	SCOP2 Family	Glycosyl Hydrolase Family 88	8089101	4002626	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Six-hairpin glycosidases	8089102	3000970	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	Six-hairpin glycosidases	8089102	3000970	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Six-hairpin glycosidases	8089102	3000970	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Glyco_hydro_88	e3vxdA2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_88	ECOD (1.6)
B	Glyco_hydro_88	e3vxdB2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_88	ECOD (1.6)
D	Glyco_hydro_88	e3vxdD2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_88	ECOD (1.6)
C	Glyco_hydro_88	e3vxdC2	A: alpha superhelices	X: Repetitive alpha hairpins	H: alpha/alpha toroid (From Topology)	T: alpha/alpha toroid	F: Glyco_hydro_88	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
B	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
D	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
C	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF07470	Glycosyl Hydrolase Family 88 (Glyco_hydro_88)	Glycosyl Hydrolase Family 88	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Putative uncharacterized protein gbs1889	hydrolase activity, acting on glycosyl bonds chondroitin hydrolase activity hexosaminidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity endogalactosaminidase activity catalytic activity unsaturated chondroitin disaccharide hydrolase activity	carbohydrate metabolic process polysaccharide metabolic process catabolic process polysaccharide catabolic process carbohydrate catabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process macromolecule catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
A, B, C, D	IPR010905	Glycosyl hydrolase, family 88	Family
A, B, C, D	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily
A, B, C, D	IPR052369	Unsaturated Glycosaminoglycan Hydrolases	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.