3WYF
Crystal structure of Xpo1p-Yrb2p-Gsp1p-GTP complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Ras | e3wyfA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
D | Ras | e3wyfD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
E | Ran_BP1 | e3wyfE1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: Ran_BP1 | ECOD (1.6) |
B | Ran_BP1 | e3wyfB1 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: Ran_BP1 | ECOD (1.6) |
C | CRM1_C | e3wyfC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CRM1_C | ECOD (1.6) |
C | Xpo1 | e3wyfC2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Xpo1 | ECOD (1.6) |
F | CRM1_C | e3wyfF1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: CRM1_C | ECOD (1.6) |
F | Xpo1 | e3wyfF2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Xpo1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
D | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
E | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
B | 2.30.29.30 | Mainly Beta | Roll | PH-domain like | Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | CATH (4.3.0) |
C | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00638 | RanBP1 domain (Ran_BP1) | RanBP1 domain | - | Domain | |
PF08389 | Exportin 1-like protein (Xpo1) | Exportin 1-like protein | - | Repeat | |
PF18784 | CRM1 / Exportin repeat 2 (CRM1_repeat_2) | CRM1 / Exportin repeat 2 | - | Repeat | |
PF18777 | Chromosome region maintenance or exportin repeat (CRM1_repeat) | Chromosome region maintenance or exportin repeat | - | Repeat | |
PF18787 | CRM1 / Exportin repeat 3 (CRM1_repeat_3) | CRM1 / Exportin repeat 3 | - | Repeat | |
PF03810 | Importin-beta N-terminal domain (IBN_N) | Importin-beta N-terminal domain | - | Repeat | |
PF08767 | CRM1 C terminal (CRM1_C) | CRM1 C terminal | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011993 | PH-like domain superfamily | Homologous Superfamily | |
IPR000156 | Ran binding domain | Domain | |
IPR045255 | Ran binding protein RanBP1-like | Family | |
IPR041123 | Chromosome region maintenance repeat | Repeat | |
IPR016024 | Armadillo-type fold | Homologous Superfamily | |
IPR041235 | Exportin-1, repeat 2 | Repeat | |
IPR001494 | Importin-beta, N-terminal domain | Domain | |
IPR011989 | Armadillo-like helical | Homologous Superfamily | |
IPR045065 | Exportin-1/5 | Family | |
IPR013598 | Exportin-1/Importin-beta-like | Domain | |
IPR014877 | Exportin-1, C-terminal | Domain | |
IPR040485 | Exportin-1, repeat 3 | Repeat |