3IAS
Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus, oxidized, 4 mol/ASU, re-refined to 3.15 angstrom resolution
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 1] | SCOP2B Superfamily | Nqo1C-terminal domain-like | 8041340 | 3001171 | SCOP2B (2022-06-29) |
A [auth 1] | SCOP2B Superfamily | Nqo1 middle domain-like | 8041342 | 3000871 | SCOP2B (2022-06-29) |
A [auth 1] | SCOP2B Superfamily | Nqo1 FMN-binding domain-like | 8041341 | 3001265 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Nqo1 FMN-binding domain-like | 8041341 | 3001265 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Nqo1 middle domain-like | 8041342 | 3000871 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Nqo1C-terminal domain-like | 8041340 | 3001171 | SCOP2B (2022-06-29) |
Y [auth S] | SCOP2B Superfamily | Nqo1 middle domain-like | 8041342 | 3000871 | SCOP2B (2022-06-29) |
Y [auth S] | SCOP2B Superfamily | Nqo1 FMN-binding domain-like | 8041341 | 3001265 | SCOP2B (2022-06-29) |
Y [auth S] | SCOP2B Superfamily | Nqo1C-terminal domain-like | 8041340 | 3001171 | SCOP2B (2022-06-29) |
Q [auth J] | SCOP2B Superfamily | Nqo1C-terminal domain-like | 8041340 | 3001171 | SCOP2B (2022-06-29) |
Q [auth J] | SCOP2B Superfamily | Nqo1 FMN-binding domain-like | 8041341 | 3001265 | SCOP2B (2022-06-29) |
Q [auth J] | SCOP2B Superfamily | Nqo1 middle domain-like | 8041342 | 3000871 | SCOP2B (2022-06-29) |
B [auth 2] | SCOP2B Superfamily | Thioredoxin-like | 8041344 | 3000031 | SCOP2B (2022-06-29) |
J [auth B] | SCOP2B Superfamily | Thioredoxin-like | 8041344 | 3000031 | SCOP2B (2022-06-29) |
R [auth K] | SCOP2B Superfamily | Thioredoxin-like | 8041344 | 3000031 | SCOP2B (2022-06-29) |
Z [auth T] | SCOP2B Superfamily | Thioredoxin-like | 8041344 | 3000031 | SCOP2B (2022-06-29) |
AA [auth U] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8041347 | 3000113 | SCOP2B (2022-06-29) |
AA [auth U] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8041346 | 3001453 | SCOP2B (2022-06-29) |
AA [auth U] | SCOP2B Superfamily | ADC-like | 8041345 | 3001132 | SCOP2B (2022-06-29) |
AA [auth U] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041348 | 3000020 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8041346 | 3001453 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | ADC-like | 8041345 | 3001132 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8041347 | 3000113 | SCOP2B (2022-06-29) |
C [auth 3] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041348 | 3000020 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | ADC-like | 8041345 | 3001132 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8041346 | 3001453 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8041347 | 3000113 | SCOP2B (2022-06-29) |
K [auth C] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041348 | 3000020 | SCOP2B (2022-06-29) |
S [auth L] | SCOP2B Superfamily | ADC-like | 8041345 | 3001132 | SCOP2B (2022-06-29) |
S [auth L] | SCOP2B Superfamily | 2Fe-2S ferredoxin-like | 8041347 | 3000113 | SCOP2B (2022-06-29) |
S [auth L] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041348 | 3000020 | SCOP2B (2022-06-29) |
S [auth L] | SCOP2B Superfamily | Formate dehydrogenase/DMSO reductase, domains 1-3 | 8041346 | 3001453 | SCOP2B (2022-06-29) |
BA [auth V] | SCOP2B Superfamily | HydB/Nqo4-like | 8041349 | 3001849 | SCOP2B (2022-06-29) |
D [auth 4] | SCOP2B Superfamily | HydB/Nqo4-like | 8041349 | 3001849 | SCOP2B (2022-06-29) |
L [auth D] | SCOP2B Superfamily | HydB/Nqo4-like | 8041349 | 3001849 | SCOP2B (2022-06-29) |
T [auth M] | SCOP2B Superfamily | HydB/Nqo4-like | 8041349 | 3001849 | SCOP2B (2022-06-29) |
CA [auth W] | SCOP2B Superfamily | Nqo5-like | 8041351 | 3001071 | SCOP2B (2022-06-29) |
E [auth 5] | SCOP2B Superfamily | Nqo5-like | 8041351 | 3001071 | SCOP2B (2022-06-29) |
M [auth E] | SCOP2B Superfamily | Nqo5-like | 8041351 | 3001071 | SCOP2B (2022-06-29) |
U [auth N] | SCOP2B Superfamily | Nqo5-like | 8041351 | 3001071 | SCOP2B (2022-06-29) |
DA [auth X] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8041352 | 3002291 | SCOP2B (2022-06-29) |
F [auth 6] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8041352 | 3002291 | SCOP2B (2022-06-29) |
N [auth F] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8041352 | 3002291 | SCOP2B (2022-06-29) |
V [auth O] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8041352 | 3002291 | SCOP2B (2022-06-29) |
G [auth 9] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041354 | 3000020 | SCOP2B (2022-06-29) |
O [auth G] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041354 | 3000020 | SCOP2B (2022-06-29) |
W [auth P] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041354 | 3000020 | SCOP2B (2022-06-29) |
EA [auth Y] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8041354 | 3000020 | SCOP2B (2022-06-29) |
FA [auth Z] | SCOP2B Superfamily | Frataxin/Nqo15-like | 8041353 | 3001840 | SCOP2B (2022-06-29) |
H [auth 7] | SCOP2B Superfamily | Frataxin/Nqo15-like | 8041353 | 3001840 | SCOP2B (2022-06-29) |
P [auth H] | SCOP2B Superfamily | Frataxin/Nqo15-like | 8041353 | 3001840 | SCOP2B (2022-06-29) |
X [auth Q] | SCOP2B Superfamily | Frataxin/Nqo15-like | 8041353 | 3001840 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth 1] | NADH_4Fe-4S | e3ias11 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: NADH_4Fe-4S | ECOD (1.6) |
A [auth 1] | SLBB | e3ias12 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: SLBB | ECOD (1.6) |
A [auth 1] | Complex1_51K | e3ias13 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: Complex1_51K | ECOD (1.6) |
I [auth A] | NADH_4Fe-4S | e3iasA1 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: NADH_4Fe-4S | ECOD (1.6) |
I [auth A] | SLBB | e3iasA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: SLBB | ECOD (1.6) |
I [auth A] | Complex1_51K | e3iasA3 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: Complex1_51K | ECOD (1.6) |
Y [auth S] | NADH_4Fe-4S | e3iasS1 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: NADH_4Fe-4S | ECOD (1.6) |
Y [auth S] | SLBB | e3iasS2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: SLBB | ECOD (1.6) |
Y [auth S] | Complex1_51K | e3iasS3 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: Complex1_51K | ECOD (1.6) |
Q [auth J] | NADH_4Fe-4S | e3iasJ1 | A: alpha bundles | X: Bromodomain-like | H: Nqo1C-terminal domain-like (From Topology) | T: Nqo1C-terminal domain-like | F: NADH_4Fe-4S | ECOD (1.6) |
Q [auth J] | SLBB | e3iasJ2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Nqo1 middle domain-like | F: SLBB | ECOD (1.6) |
Q [auth J] | Complex1_51K | e3iasJ3 | A: a/b three-layered sandwiches | X: Nqo1 FMN-binding domain-like (From Topology) | H: Nqo1 FMN-binding domain-like (From Topology) | T: Nqo1 FMN-binding domain-like | F: Complex1_51K | ECOD (1.6) |
B [auth 2] | 2Fe-2S_thioredx_N | e3ias22 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: 2Fe-2S_thioredx_N | ECOD (1.6) |
B [auth 2] | 2Fe-2S_thioredx_C | e3ias21 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: 2Fe-2S_thioredx_C | ECOD (1.6) |
J [auth B] | 2Fe-2S_thioredx_N | e3iasB2 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: 2Fe-2S_thioredx_N | ECOD (1.6) |
J [auth B] | 2Fe-2S_thioredx_C | e3iasB1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: 2Fe-2S_thioredx_C | ECOD (1.6) |
R [auth K] | 2Fe-2S_thioredx_N | e3iasK2 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: 2Fe-2S_thioredx_N | ECOD (1.6) |
R [auth K] | 2Fe-2S_thioredx_C | e3iasK1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: 2Fe-2S_thioredx_C | ECOD (1.6) |
Z [auth T] | 2Fe-2S_thioredx_N | e3iasT2 | A: alpha bundles | X: NQO2 helical bundle domain (From Topology) | H: NQO2 helical bundle domain (From Topology) | T: NQO2 helical bundle domain | F: 2Fe-2S_thioredx_N | ECOD (1.6) |
Z [auth T] | 2Fe-2S_thioredx_C | e3iasT1 | A: a+b three layers | X: Thioredoxin-like | H: Thioredoxin-like (From Topology) | T: Thioredoxin-like | F: 2Fe-2S_thioredx_C | ECOD (1.6) |
AA [auth U] | Molydop_binding | e3iasU8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
AA [auth U] | PRK09129 | e3iasU7 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PRK09129 | ECOD (1.6) |
AA [auth U] | Fer2_4 | e3iasU4 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_4 | ECOD (1.6) |
AA [auth U] | Molybdop_Fe4S4 | e3iasU10 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4 | ECOD (1.6) |
AA [auth U] | Molybdopterin_2nd | e3iasU6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
AA [auth U] | NuoG_2nd | e3iasU5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: NuoG_2nd | ECOD (1.6) |
AA [auth U] | NADH-G_4Fe-4S_3 | e3iasU9 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: NADH-G_4Fe-4S_3 | ECOD (1.6) |
C [auth 3] | Molydop_binding | e3ias38 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
C [auth 3] | PRK09129 | e3ias37 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PRK09129 | ECOD (1.6) |
C [auth 3] | Fer2_4 | e3ias34 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_4 | ECOD (1.6) |
C [auth 3] | Molybdop_Fe4S4 | e3ias310 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4 | ECOD (1.6) |
C [auth 3] | Molybdopterin_2nd | e3ias36 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
C [auth 3] | NuoG_2nd | e3ias35 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: NuoG_2nd | ECOD (1.6) |
C [auth 3] | NADH-G_4Fe-4S_3 | e3ias39 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: NADH-G_4Fe-4S_3 | ECOD (1.6) |
K [auth C] | Molydop_binding | e3iasC8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
K [auth C] | PRK09129 | e3iasC7 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PRK09129 | ECOD (1.6) |
K [auth C] | Fer2_4 | e3iasC4 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_4 | ECOD (1.6) |
K [auth C] | Molybdop_Fe4S4 | e3iasC10 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4 | ECOD (1.6) |
K [auth C] | Molybdopterin_2nd | e3iasC6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
K [auth C] | NuoG_2nd | e3iasC5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: NuoG_2nd | ECOD (1.6) |
K [auth C] | NADH-G_4Fe-4S_3 | e3iasC9 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: NADH-G_4Fe-4S_3 | ECOD (1.6) |
S [auth L] | Molydop_binding | e3iasL8 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: Molydop_binding | ECOD (1.6) |
S [auth L] | PRK09129 | e3iasL7 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PRK09129 | ECOD (1.6) |
S [auth L] | Fer2_4 | e3iasL4 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Fer2_4 | ECOD (1.6) |
S [auth L] | Molybdop_Fe4S4 | e3iasL10 | A: a+b two layers | X: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domain 1 | F: Molybdop_Fe4S4 | ECOD (1.6) |
S [auth L] | Molybdopterin_2nd | e3iasL6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: Molybdopterin_2nd | ECOD (1.6) |
S [auth L] | NuoG_2nd | e3iasL5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology) | T: Formate dehydrogenase/DMSO reductase, domains 2 and 3 | F: NuoG_2nd | ECOD (1.6) |
S [auth L] | NADH-G_4Fe-4S_3 | e3iasL9 | A: extended segments | X: iron-sulfur center-binding helical hairpin (From Topology) | H: iron-sulfur center-binding helical hairpin (From Topology) | T: iron-sulfur center-binding helical hairpin | F: NADH-G_4Fe-4S_3 | ECOD (1.6) |
BA [auth V] | Complex1_49kDa_1st | e3iasV6 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
BA [auth V] | NuoD | e3iasV5 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
BA [auth V] | Complex1_49kDa_2nd | e3iasV4 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
D [auth 4] | Complex1_49kDa_1st | e3ias46 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
D [auth 4] | NuoD | e3ias45 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
D [auth 4] | Complex1_49kDa_2nd | e3ias44 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
L [auth D] | Complex1_49kDa_1st | e3iasD6 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
L [auth D] | NuoD | e3iasD5 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
L [auth D] | Complex1_49kDa_2nd | e3iasD4 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
T [auth M] | Complex1_49kDa_1st | e3iasM6 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: Complex1_49kDa_1st | ECOD (1.6) |
T [auth M] | NuoD | e3iasM5 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: NuoD | ECOD (1.6) |
T [auth M] | Complex1_49kDa_2nd | e3iasM4 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: Complex1_49kDa_2nd | ECOD (1.6) |
CA [auth W] | Complex1_30kDa | e3iasW1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
E [auth 5] | Complex1_30kDa | e3ias51 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
M [auth E] | Complex1_30kDa | e3iasE1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
U [auth N] | Complex1_30kDa | e3iasN1 | A: a+b two layers | X: Nqo5-like | H: Nqo5-like (From Topology) | T: Nqo5-like | F: Complex1_30kDa | ECOD (1.6) |
DA [auth X] | Oxidored_q6 | e3iasX1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
F [auth 6] | Oxidored_q6 | e3ias61 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
N [auth F] | Oxidored_q6 | e3iasF1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
V [auth O] | Oxidored_q6 | e3iasO1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: Oxidored_q6 | ECOD (1.6) |
G [auth 9] | Fer4_21_1 | e3ias91 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
O [auth G] | Fer4_21_1 | e3iasG1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
W [auth P] | Fer4_21_1 | e3iasP1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
EA [auth Y] | Fer4_21_1 | e3iasY1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
FA [auth Z] | NADH_Oxid_Nqo15 | e3iasZ1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: NADH_Oxid_Nqo15 | ECOD (1.6) |
H [auth 7] | NADH_Oxid_Nqo15 | e3ias71 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: NADH_Oxid_Nqo15 | ECOD (1.6) |
P [auth H] | NADH_Oxid_Nqo15 | e3iasH1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: NADH_Oxid_Nqo15 | ECOD (1.6) |
X [auth Q] | NADH_Oxid_Nqo15 | e3iasQ1 | A: a+b two layers | X: Type III secretory system chaperone-like | H: Frataxin-like (From Topology) | T: Frataxin-like | F: NADH_Oxid_Nqo15 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 1], I [auth A], Q [auth J], Y [auth S] | PF10531 | SLBB domain (SLBB) | SLBB domain | - | Domain |
A [auth 1], I [auth A], Q [auth J], Y [auth S] | PF22461 | SLBB domain (SLBB_2) | SLBB domain | This entry represents a set of SLBB domains [5]. | Domain |
A [auth 1], I [auth A], Q [auth J], Y [auth S] | PF01512 | Respiratory-chain NADH dehydrogenase 51 Kd subunit (Complex1_51K) | Respiratory-chain NADH dehydrogenase 51 Kd subunit | - | Family |
A [auth 1], I [auth A], Q [auth J], Y [auth S] | PF10589 | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S) | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | - | Domain |
B [auth 2], J [auth B], R [auth K], Z [auth T] | PF01257 | Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx) | Thioredoxin-like [2Fe-2S] ferredoxin | - | Family |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF01568 | Molydopterin dinucleotide binding domain (Molydop_binding) | Molydopterin dinucleotide binding domain | This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entir ... | Domain |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF04879 | Molybdopterin oxidoreductase Fe4S4 domain (Molybdop_Fe4S4) | Molybdopterin oxidoreductase Fe4S4 domain | This domain is found in formate dehydrogenase H for which the structure is known. This first domain (residues 1 to 60) of PDB:1aa6 is an Fe4S4 cluster just below the protein surface [1]. | Domain |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | - | Family |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF00111 | 2Fe-2S iron-sulfur cluster binding domain (Fer2) | 2Fe-2S iron-sulfur cluster binding domain | - | Domain |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF22117 | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain (Nqo3_Fer4) | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain | NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contain ... | Domain |
AA [auth U], C [auth 3], K [auth C], S [auth L] | PF10588 | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3) | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | - | Domain |
BA [auth V], D [auth 4], L [auth D], T [auth M] | PF00346 | Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa) | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | - | Family |
CA [auth W], E [auth 5], M [auth E], U [auth N] | PF00329 | Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa) | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | - | Family |
DA [auth X], F [auth 6], N [auth F], V [auth O] | PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6) | NADH ubiquinone oxidoreductase, 20 Kd subunit | - | Family |
EA [auth Y], G [auth 9], O [auth G], W [auth P] | PF00037 | 4Fe-4S binding domain (Fer4) | 4Fe-4S binding domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. | Domain |
FA [auth Z], H [auth 7], P [auth H], X [auth Q] | PF11497 | NADH-quinone oxidoreductase chain 15 (NADH_Oxid_Nqo15) | NADH-quinone oxidoreductase chain 15 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Electron Transport Chain Complexes: Complex I | Complex I soluble domain, oxidized (2 mol/ASU) |