4LFE

Crystal structure of geranylgeranyl diphosphate synthase sub1274 (target efi-509455) from streptococcus uberis 0140j with bound magnesium and isopentyl diphosphate, partially liganded complex;


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4lfea1 All alpha proteins Terpenoid synthases Terpenoid synthases automated matches automated matches (Streptococcus uberis 0140J ) [TaxId: 218495 ], SCOPe (2.08)
Ad4lfea2 Artifacts Tags Tags Tags N-terminal Tags (Streptococcus uberis 0140J ) [TaxId: 218495 ], SCOPe (2.08)
Bd4lfeb_ All alpha proteins Terpenoid synthases Terpenoid synthases automated matches automated matches (Streptococcus uberis 0140J ) [TaxId: 218495 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyIsoprenyl diphosphate synthases 8078644 4001453 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyTerpenoid synthases 8078645 3001615 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyTerpenoid synthases 8078645 3001615 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Apolyprenyl_synte4lfeA1 A: alpha bundlesX: Terpenoid synthases (From Topology)H: Terpenoid synthases (From Topology)T: Terpenoid synthasesF: polyprenyl_syntECOD (1.6)
Bpolyprenyl_synte4lfeB1 A: alpha bundlesX: Terpenoid synthases (From Topology)H: Terpenoid synthases (From Topology)T: Terpenoid synthasesF: polyprenyl_syntECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.600.10 Mainly Alpha Orthogonal Bundle Farnesyl Diphosphate Synthase Farnesyl Diphosphate SynthaseCATH (4.3.0)
B1.10.600.10 Mainly Alpha Orthogonal Bundle Farnesyl Diphosphate Synthase Farnesyl Diphosphate SynthaseCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF00348Polyprenyl synthetase (polyprenyl_synt)Polyprenyl synthetase- Domain