4LFG
Crystal structure of geranylgeranyl diphosphate synthase sub1274 (target efi-509455) from streptococcus uberis 0140j with bound magnesium and isopentyl diphosphate, fully liganded complex;
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d4lfga1 | All alpha proteins | Terpenoid synthases | Terpenoid synthases | automated matches | automated matches | (Streptococcus uberis 0140J ) [TaxId: 218495 ], | SCOPe (2.08) |
A | d4lfga2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Streptococcus uberis 0140J ) [TaxId: 218495 ], | SCOPe (2.08) |
B | d4lfgb_ | All alpha proteins | Terpenoid synthases | Terpenoid synthases | automated matches | automated matches | (Streptococcus uberis 0140J ) [TaxId: 218495 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | polyprenyl_synt | e4lfgA1 | A: alpha bundles | X: Terpenoid synthases (From Topology) | H: Terpenoid synthases (From Topology) | T: Terpenoid synthases | F: polyprenyl_synt | ECOD (1.6) |
B | polyprenyl_synt | e4lfgB1 | A: alpha bundles | X: Terpenoid synthases (From Topology) | H: Terpenoid synthases (From Topology) | T: Terpenoid synthases | F: polyprenyl_synt | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.600.10 | Mainly Alpha | Orthogonal Bundle | Farnesyl Diphosphate Synthase | Farnesyl Diphosphate Synthase | CATH (4.3.0) |
B | 1.10.600.10 | Mainly Alpha | Orthogonal Bundle | Farnesyl Diphosphate Synthase | Farnesyl Diphosphate Synthase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00348 | Polyprenyl synthetase (polyprenyl_synt) | Polyprenyl synthetase | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Geranylgeranyl Diphosphate Synthase |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000092 | Polyprenyl synthetase | Family | |
IPR053378 | Prenyl diphosphate synthase | Family | |
IPR008949 | Isoprenoid synthase domain superfamily | Homologous Superfamily | |
IPR033749 | Polyprenyl synthetase, conserved site | Conserved Site |