4OW1 | pdb_00004ow1

Crystal Structure of Resuscitation Promoting Factor C

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4ow1a_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
B	d4ow1b_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
C [auth E]	d4ow1e_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
D [auth X]	d4ow1x_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
E [auth W]	d4ow1w_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
F [auth T]	d4ow1t_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
G [auth S]	d4ow1s_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)
H [auth U]	d4ow1u_	Alpha and beta proteins (a+b)	Lysozyme-like	Lysozyme-like	automated matches	automated matches	(Mycobacterium tuberculosis ) [TaxId: 1773 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Lysozyme-like	8083877	3001879	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Lysozyme-like	8083877	3001879	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	Lysozyme-like	8083877	3001879	SCOP2B (2022-06-29)
D [auth X]	SCOP2 Family	RPF-like	8083876	4002498	SCOP2 (2022-06-29)
D [auth X]	SCOP2 Superfamily	Lysozyme-like	8083877	3001879	SCOP2 (2022-06-29)
E [auth W]	SCOP2B Superfamily	Lysozyme-like	8083877	3001879	SCOP2B (2022-06-29)
F [auth T]	SCOP2B Superfamily	Lysozyme-like	8083877	3001879	SCOP2B (2022-06-29)
G [auth S]	SCOP2B Superfamily	Lysozyme-like	8083877	3001879	SCOP2B (2022-06-29)
H [auth U]	SCOP2B Superfamily	Lysozyme-like	8083877	3001879	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Transglycosylas	e4ow1A1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Transglycosylas	ECOD (1.6)
B	Transglycosylas	e4ow1B1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Transglycosylas	ECOD (1.6)
C [auth E]	Transglycosylas	e4ow1E1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Transglycosylas	ECOD (1.6)
D [auth X]	Transglycosylas	e4ow1X1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Transglycosylas	ECOD (1.6)
E [auth W]	Transglycosylas	e4ow1W1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Transglycosylas	ECOD (1.6)
F [auth T]	Transglycosylas	e4ow1T1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Transglycosylas	ECOD (1.6)
G [auth S]	Transglycosylas	e4ow1S1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Transglycosylas	ECOD (1.6)
H [auth U]	Transglycosylas	e4ow1U1	A: a+b complex topology	X: Lysozyme-like (From Homology)	H: Lysozyme-like	T: Lysozyme-like	F: Transglycosylas	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)
B	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)
C [auth E]	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)
D [auth X]	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)
E [auth W]	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)
F [auth T]	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)
G [auth S]	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)
H [auth U]	1.10.530.10	Mainly Alpha	Orthogonal Bundle	Lysozyme		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth E], D [auth X], E [auth W], A, B, C [auth E], D [auth X], E [auth W], F [auth T], G [auth S], H [auth U]	PF06737	Transglycosylase-like domain (Transglycosylas)	Transglycosylase-like domain	This family of proteins are very likely to act as transglycosylase enzymes related to Pfam:PF00062 and Pfam:PF01464. These other families are weakly matched by this family, and include the known active site residues.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth E], D [auth X], E [auth W], A, B, C [auth E], D [auth X], E [auth W], F [auth T], G [auth S], H [auth U]	Resuscitation-promoting factor RpfC	hydrolase activity catalytic activity	regulation of biosynthetic process regulation of biological process regulation of cellular process negative regulation of metabolic process biological regulation negative regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of cellular process regulation of biosynthetic process regulation of biological process regulation of cellular process negative regulation of metabolic process biological regulation negative regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of cellular process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process negative regulation of macromolecule metabolic process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of gene expression positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process response to stimulus signaling quorum sensing cell-cell signaling detection of cell density detection of biotic stimulus response to biotic stimulus cell communication detection of stimulus cell population proliferation regulation of cell population proliferation	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth E], D [auth X], E [auth W], A, B, C [auth E], D [auth X], E [auth W], F [auth T], G [auth S], H [auth U]	IPR010618	Resuscitation-promoting factor, core lysozyme-like domain	Domain
A, B, C [auth E], D [auth X], E [auth W], A, B, C [auth E], D [auth X], E [auth W], F [auth T], G [auth S], H [auth U]	IPR023346	Lysozyme-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.