4V5V | pdb_00004v5v

Structure of respiratory syncytial virus nucleocapsid protein, P1 crystal form

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth BD]	Pneumo_ncap	e4v5vBD1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
Y [auth BC]	Pneumo_ncap	e4v5vBC1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
X [auth BB]	Pneumo_ncap	e4v5vBB1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
W [auth BA]	Pneumo_ncap	e4v5vBA1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
V [auth AV]	Pneumo_ncap	e4v5vAV1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
U [auth AU]	Pneumo_ncap	e4v5vAU1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
T [auth AT]	Pneumo_ncap	e4v5vAT1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
S [auth AS]	Pneumo_ncap	e4v5vAS1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
RA [auth BZ]	Pneumo_ncap	e4v5vBZ1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
R [auth AR]	Pneumo_ncap	e4v5vAR1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
QA [auth BY]	Pneumo_ncap	e4v5vBY1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
Q [auth AQ]	Pneumo_ncap	e4v5vAQ1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
P [auth AP]	Pneumo_ncap	e4v5vAP1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
OA [auth BW]	Pneumo_ncap	e4v5vBW1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
O [auth AO]	Pneumo_ncap	e4v5vAO1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
N [auth AN]	Pneumo_ncap	e4v5vAN1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
MA [auth BQ]	Pneumo_ncap	e4v5vBQ1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
LA [auth BP]	Pneumo_ncap	e4v5vBP1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
L [auth AL]	Pneumo_ncap	e4v5vAL1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
KA [auth BO]	Pneumo_ncap	e4v5vBO1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
JA [auth BN]	Pneumo_ncap	e4v5vBN1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
J [auth AJ]	Pneumo_ncap	e4v5vAJ1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
IA [auth BM]	Pneumo_ncap	e4v5vBM1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
I [auth AI]	Pneumo_ncap	e4v5vAI1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
HA [auth BL]	Pneumo_ncap	e4v5vBL1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
H [auth AH]	Pneumo_ncap	e4v5vAH1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
GA [auth BK]	Pneumo_ncap	e4v5vBK1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
G [auth AG]	Pneumo_ncap	e4v5vAG1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
FA [auth BJ]	Pneumo_ncap	e4v5vBJ1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
F [auth AF]	Pneumo_ncap	e4v5vAF1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
EA [auth BI]	Pneumo_ncap	e4v5vBI1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
E [auth AE]	Pneumo_ncap	e4v5vAE1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
DA [auth BH]	Pneumo_ncap	e4v5vBH1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
D [auth AD]	Pneumo_ncap	e4v5vAD1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
CA [auth BG]	Pneumo_ncap	e4v5vBG1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
C [auth AC]	Pneumo_ncap	e4v5vAC1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
BA [auth BF]	Pneumo_ncap	e4v5vBF1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
B [auth AB]	Pneumo_ncap	e4v5vAB1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
AA [auth BE]	Pneumo_ncap	e4v5vBE1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)
A [auth AA]	Pneumo_ncap	e4v5vAA1	A: alpha complex topology	X: P40 nucleoprotein-like	H: P40 nucleoprotein-related (From Topology)	T: P40 nucleoprotein-related	F: Pneumo_ncap	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], CA [auth BG], D [auth AD], DA [auth BH], E [auth AE], EA [auth BI], F [auth AF], FA [auth BJ], G [auth AG], GA [auth BK], H [auth AH], HA [auth BL], I [auth AI], IA [auth BM], J [auth AJ], JA [auth BN], KA [auth BO], L [auth AL], LA [auth BP], MA [auth BQ], N [auth AN], O [auth AO], OA [auth BW], P [auth AP], Q [auth AQ], QA [auth BY], R [auth AR], RA [auth BZ], S [auth AS], T [auth AT], U [auth AU], V [auth AV], W [auth BA], X [auth BB], Y [auth BC], Z [auth BD]	PF03246	Pneumovirus nucleocapsid protein (Pneumo_ncap)	Pneumovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
K [auth AK], M [auth AM], NA [auth BR], PA [auth BX]	RNA	-	-	-
A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], CA [auth BG], D [auth AD], DA [auth BH], E [auth AE], EA [auth BI], F [auth AF], FA [auth BJ], G [auth AG], GA [auth BK], H [auth AH], HA [auth BL], I [auth AI], IA [auth BM], J [auth AJ], JA [auth BN], KA [auth BO], L [auth AL], LA [auth BP], MA [auth BQ], N [auth AN], O [auth AO], OA [auth BW], P [auth AP], Q [auth AQ], QA [auth BY], R [auth AR], RA [auth BZ], S [auth AS], T [auth AT], U [auth AU], V [auth AV], W [auth BA], X [auth BB], Y [auth BC], Z [auth BD]	RESPIRATORY SYNCYTIAL VIRUS NUCLEOCAPSID PROTEIN	enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity RNA binding binding nucleic acid binding	symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated perturbation of host immune response biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host innate immune response symbiont-mediated perturbation of host signal transduction pathway symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated perturbation of host immune response biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host innate immune response symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway response to stimulus response to other organism symbiont-mediated perturbation of host defenses symbiont-mediated suppression of host PKR/eIFalpha signaling symbiont-mediated response to host defenses response to external stimulus response to biotic stimulus symbiont-mediated suppression of host-directed shutoff of host translation symbiont-mediated suppression of host defenses response to host response to external biotic stimulus symbiont-mediated suppression of host interferon-mediated signaling pathway symbiont-mediated suppression of host type I interferon-mediated signaling pathway symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MDA-5 activity symbiont-mediated perturbation of host NF-kappaB cascade symbiont-mediated suppression of host NF-kappaB cascade	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], CA [auth BG], D [auth AD], DA [auth BH], E [auth AE], EA [auth BI], F [auth AF], FA [auth BJ], G [auth AG], GA [auth BK], H [auth AH], HA [auth BL], I [auth AI], IA [auth BM], J [auth AJ], JA [auth BN], KA [auth BO], L [auth AL], LA [auth BP], MA [auth BQ], N [auth AN], O [auth AO], OA [auth BW], P [auth AP], Q [auth AQ], QA [auth BY], R [auth AR], RA [auth BZ], S [auth AS], T [auth AT], U [auth AU], V [auth AV], W [auth BA], X [auth BB], Y [auth BC], Z [auth BD]	IPR004930	Pneumovirus nucleocapsid protein	Family