4XD1

X-ray structure of the N-formyltransferase QdtF from Providencia alcalifaciens, W305A mutant, in the presence of TDP-Qui3N and N5-THF

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AFormyl_trans_C_1e4xd1A1 A: beta barrelsX: FMT C-terminal domain-likeH: FMT C-terminal domain-related (From Topology)T: FMT C-terminal domain-relatedF: Formyl_trans_C_1ECOD (1.6)
AAnk_2e4xd1A2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Ankyrin repeat (From Topology)T: Ankyrin repeatF: Ank_2ECOD (1.6)
AFormyl_trans_Ne4xd1A3 A: a/b three-layered sandwichesX: Formyltransferase (From Topology)H: Formyltransferase (From Topology)T: FormyltransferaseF: Formyl_trans_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF12796Ankyrin repeats (3 copies) (Ank_2)Ankyrin repeats (3 copies)- Repeat
PF00551Formyl transferase (Formyl_trans_N)Formyl transferaseThis family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces ...This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
TDP-3-aminoquinovose-N-formyltransferase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR002110Ankyrin repeatRepeat
IPR002376Formyl transferase, N-terminalDomain
IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
IPR036477Formyl transferase, N-terminal domain superfamilyHomologous Superfamily
IPR011034Formyl transferase-like, C-terminal domain superfamilyHomologous Superfamily