5F0M | pdb_00005f0m

Structure of retromer VPS26-VPS35 subunits bound to SNX3 and DMT1 (SeMet labeled)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyArrestin/Vps26-like 8051909 3002071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyArrestin/Vps26-like 8051908 3002071 SCOP2B (2022-06-29)
CSCOP2 FamilyPX domain 8084568 4003533 SCOP2 (2022-06-29)
CSCOP2 SuperfamilyPX domain 8084569 3001006 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AVps35e5f0mA1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Vps35ECOD (1.6)
BVps26_Ce5f0mB2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Vps26_CECOD (1.6)
BVps26_Ne5f0mB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Vps26_NECOD (1.6)
CPXe5f0mC1 A: a+b two layersX: PX domain (From Topology)H: PX domain (From Topology)T: PX domainF: PXECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.40.640 Mainly Beta Sandwich Immunoglobulin-like CATH (4.3.0)
C3.30.1520.10 Alpha Beta 2-Layer Sandwich PX Domain Phox-like domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03635Vacuolar protein sorting-associated protein 35 (Vps35)Vacuolar protein sorting-associated protein 35- Repeat
PF03643Vacuolar protein sorting-associated protein 26 (Vps26)Vacuolar protein sorting-associated protein 26- Family
PF00787PX domain (PX)PX domainPX domains bind to phosphoinositides. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Vacuolar protein sorting-associated protein 35
Vacuolar protein sorting-associated protein 26A-
Sorting nexin-3
Natural resistance-associated macrophage protein 2