5OOB
COMPLEX OF HUMAN NUCLEAR CAP-BINDING COMPLEX WITH M7GTP AND NELF-E C-TERMINAL PEPTIDE
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | ARM repeat-like | 8042373 | 3000116 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ARM repeat-like | 8042374 | 3000116 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | ARM repeat-like | 8042371 | 3000116 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ARM repeat-like | 8042374 | 3000116 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ARM repeat-like | 8042371 | 3000116 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ARM repeat-like | 8042373 | 3000116 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ARM repeat-like | 8042371 | 3000116 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ARM repeat-like | 8042373 | 3000116 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | ARM repeat-like | 8042374 | 3000116 | SCOP2B (2022-06-29) |
H [auth I] | SCOP2B Superfamily | ARM repeat-like | 8042371 | 3000116 | SCOP2B (2022-06-29) |
H [auth I] | SCOP2B Superfamily | ARM repeat-like | 8042373 | 3000116 | SCOP2B (2022-06-29) |
H [auth I] | SCOP2B Superfamily | ARM repeat-like | 8042374 | 3000116 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RNA-binding domain, RBD | 8042382 | 3000110 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RNA-binding domain, RBD | 8042382 | 3000110 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RNA-binding domain, RBD | 8042382 | 3000110 | SCOP2B (2022-06-29) |
I [auth J] | SCOP2B Superfamily | RNA-binding domain, RBD | 8042382 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | MIF4G | e5oobA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G | ECOD (1.6) |
A | MIF4G_like | e5oobA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G_like | ECOD (1.6) |
A | MIF4G_like_2 | e5oobA3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G_like_2 | ECOD (1.6) |
C | MIF4G | e5oobC3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G | ECOD (1.6) |
C | MIF4G_like | e5oobC2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G_like | ECOD (1.6) |
C | MIF4G_like_2 | e5oobC1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G_like_2 | ECOD (1.6) |
F | MIF4G | e5oobF3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G | ECOD (1.6) |
F | MIF4G_like | e5oobF2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G_like | ECOD (1.6) |
F | MIF4G_like_2 | e5oobF1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G_like_2 | ECOD (1.6) |
H [auth I] | MIF4G | e5oobI2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G | ECOD (1.6) |
H [auth I] | MIF4G_like | e5oobI1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G_like | ECOD (1.6) |
H [auth I] | MIF4G_like_2 | e5oobI3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: MIF4G_like_2 | ECOD (1.6) |
B | RRM_1_6 | e5oobB1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_6 | ECOD (1.6) |
D | RRM_1_6 | e5oobD1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_6 | ECOD (1.6) |
G | RRM_1_6 | e5oobG1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_6 | ECOD (1.6) |
I [auth J] | RRM_1_6 | e5oobJ1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_6 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.180 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
C | 1.25.40.180 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
F | 1.25.40.180 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
H [auth I] | 1.25.40.180 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
B | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
D | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
G | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
I [auth J] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C, F, H [auth I] | PF09088 | MIF4G like (MIF4G_like) | MIF4G like | - | Repeat |
A, C, F, H [auth I] | PF09090 | MIF4G like (MIF4G_like_2) | MIF4G like | - | Repeat |
A, C, F, H [auth I] | PF02854 | MIF4G domain (MIF4G) | MIF4G domain | - | Repeat |
B, D, G, I [auth J] | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
A, C, F, H [auth I] | Q09161 | : |
B, D, G, I [auth J] | P52298 | :