5VGR | pdb_00005vgr

Human Atlastin-3, GDP-bound

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	KOG2037	e5vgrA2	A: alpha bundles	X: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology)	H: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology)	T: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	F: KOG2037	ECOD (1.6)
A	MCM_AAA	e5vgrA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: MCM_AAA	ECOD (1.6)
B	KOG2037	e5vgrB1	A: alpha bundles	X: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology)	H: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain (From Topology)	T: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	F: KOG2037	ECOD (1.6)
B	MCM_AAA	e5vgrB2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: MCM_AAA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (utative)
B	1.20.58.420	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF02841	Guanylate-binding protein, C-terminal domain (GBP_C)	Guanylate-binding protein, C-terminal domain	Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Atlastin-3	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity identical protein binding protein binding	cellular component organization organelle organization cellular process cellular component organization or biogenesis endoplasmic reticulum organization endomembrane system organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization positive regulation of organelle organization regulation of biological process cellular component organization organelle organization cellular process cellular component organization or biogenesis endoplasmic reticulum organization endomembrane system organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization positive regulation of organelle organization regulation of biological process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization regulation of endoplasmic reticulum tubular network organization endoplasmic reticulum tubular network organization biological regulation positive regulation of biological process regulation of organelle organization positive regulation of endoplasmic reticulum tubular network organization positive regulation of cellular process Golgi organization	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle endoplasmic reticulum cytoplasm endoplasmic reticulum tubular network nuclear outer membrane-endoplasmic reticulum membrane network cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle endoplasmic reticulum cytoplasm endoplasmic reticulum tubular network nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum tubular network membrane organelle membrane endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036543	Guanylate-binding protein, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR030386	GB1/RHD3-type guanine nucleotide-binding (G) domain	Domain
A, B	IPR015894	Guanylate-binding protein, N-terminal	Domain
A, B	IPR003191	Guanylate-binding protein/Atlastin, C-terminal	Domain
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q6DD88	neuropathy, hereditary sensory, type 1F peripheral neuropathy pilocytic astrocytoma atypical teratoid rhabdoid tumor Duchenne muscular dystrophy large cell medulloblastoma malignant glioma non-small cell lung carcinoma Pain Disorder peripheral nervous system disease Riley-Day syndrome breast cancer glioblastoma lung adenocarcinoma medulloblastoma neuropathy, hereditary sensory, type 1F peripheral neuropathy pilocytic astrocytoma atypical teratoid rhabdoid tumor Duchenne muscular dystrophy large cell medulloblastoma malignant glioma non-small cell lung carcinoma Pain Disorder peripheral nervous system disease Riley-Day syndrome breast cancer glioblastoma lung adenocarcinoma medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma Charcot-Marie-Tooth disease malignant ependymoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.