6EO6

X-ray structure of the complex between human alpha-thrombin and modified 15-mer DNA aptamer containing 5-(3-(2-(1H-indol-3-yl)acetamide-N-yl)-1-propen-1-yl)-2'-deoxyuridine residue

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth H]SCOP2B SuperfamilyTrypsin-like serine proteases 8042154 3000114 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth L]Thrombin_lighte6eo6L1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Thrombin_lightECOD (1.6)
C [auth H]Trypsine6eo6H1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrel 2F: TrypsinECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
C [auth H]2.40.10.10 Mainly Beta Beta Barrel Thrombin, subunit H Trypsin-like serine proteasesCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth H]PF00089Trypsin (Trypsin)Trypsin- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth L]Prothrombin
A [auth D]GA63A - TBA MODIFIED APTAMER---
C [auth H]Prothrombin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth L]IPR018992Thrombin light chainDomain
B [auth L]IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
B [auth L]IPR003966Prothrombin/thrombinFamily
B [auth L]IPR018114Serine proteases, trypsin family, histidine active siteActive Site
B [auth L]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth L]IPR033116Serine proteases, trypsin family, serine active siteActive Site
B [auth L]IPR001254Serine proteases, trypsin domainDomain
B [auth L]IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
B [auth L]IPR000001KringleDomain
B [auth L]IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
B [auth L]IPR051659Serine Protease S1 Domain-Containing ProteinFamily
B [auth L]IPR018056Kringle, conserved siteConserved Site
B [auth L]IPR013806Kringle-like foldHomologous Superfamily
B [auth L]IPR038178Kringle superfamilyHomologous Superfamily
B [auth L]IPR001314Peptidase S1A, chymotrypsin familyFamily
B [auth L]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth H]IPR018992Thrombin light chainDomain
C [auth H]IPR037111Thrombin light chain domain superfamilyHomologous Superfamily
C [auth H]IPR003966Prothrombin/thrombinFamily
C [auth H]IPR018114Serine proteases, trypsin family, histidine active siteActive Site
C [auth H]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth H]IPR033116Serine proteases, trypsin family, serine active siteActive Site
C [auth H]IPR001254Serine proteases, trypsin domainDomain
C [auth H]IPR035972Gamma-carboxyglutamic acid-rich (GLA) domain superfamilyHomologous Superfamily
C [auth H]IPR000001KringleDomain
C [auth H]IPR000294Gamma-carboxyglutamic acid-rich (GLA) domainDomain
C [auth H]IPR051659Serine Protease S1 Domain-Containing ProteinFamily
C [auth H]IPR018056Kringle, conserved siteConserved Site
C [auth H]IPR013806Kringle-like foldHomologous Superfamily
C [auth H]IPR038178Kringle superfamilyHomologous Superfamily
C [auth H]IPR001314Peptidase S1A, chymotrypsin familyFamily
C [auth H]IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B [auth L]Pharos:  P00734
C [auth H]Pharos:  P00734