6SA1
Post catalytic complex of Prim-PolC from Mycobacterium smegmatis with gapped DNA and 3'-dUTP
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | DNA_primase_S | e6sa1A1 | A: a+b complex topology | X: Prim-pol domain (From Topology) | H: Prim-pol domain (From Topology) | T: Prim-pol domain | F: DNA_primase_S | ECOD (1.6) |
| E [auth D] | DNA_primase_S | e6sa1D1 | A: a+b complex topology | X: Prim-pol domain (From Topology) | H: Prim-pol domain (From Topology) | T: Prim-pol domain | F: DNA_primase_S | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A, E [auth D] | PF21686 | LigD, primase-polymerase domain (LigD_Prim-Pol) | LigD, primase-polymerase domain | This entry represents the primase-polymerase domain (Prim-Pol) of bacterial LigD proteins, such as LigD from Pseudomonas aeruginosa and Mycobacterium tuberculosis. LigD, together with Ku protein, is required for nonhomologous end-joining (NHEJ)-media ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| A, E [auth D] | DNA polymerase LigD, polymerase domain | - | - | |
| B, F [auth E] | DNA (5'-D(P*GP*CP*GP*AP*GP*CP*G)-3') | - | - | - |
| D [auth H], H [auth G] | DNA (5'-D(P*TP*GP*CP*GP*(DUI))-3') | - | - | - |
| C, G [auth F] | DNA (5'-D(*CP*GP*CP*TP*CP*GP*CP*AP*AP*CP*GP*CP*A)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, E [auth D] | IPR052171 | Non-homologous end joining protein LigD | Family |
| A, E [auth D] | IPR014145 | DNA ligase D, polymerase domain | Domain |
