7P72 | pdb_00007p72

The PDZ domain of SNX27 complexed with the PDZ-binding motif of MERS-E

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Annexin	8043314	3000627	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PDZ	e7p72A3	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)
A	Annexin	e7p72A1	A: alpha arrays	X: Annexin (From Topology)	H: Annexin (From Topology)	T: Annexin	F: Annexin	ECOD (1.6)
A	Annexin_1	e7p72A2	A: alpha arrays	X: Annexin (From Topology)	H: Annexin (From Topology)	T: Annexin	F: Annexin_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (utative)
A	1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V	domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00191	Annexin (Annexin)	Annexin	This family of annexins also includes giardin that has been shown to function as an annexin [1].	Domain
A	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Sorting nexin-27,Annexin A2	binding phospholipid binding lipid binding phosphatidylinositol binding phosphatidylinositol-3-phosphate binding phosphatidylinositol phosphate binding cytoskeletal protein binding protein binding cell adhesion molecule binding cadherin binding involved in cell-cell adhesion cadherin binding cell adhesion mediator activity cell-cell adhesion mediator activity calcium-dependent phospholipid binding binding phospholipid binding lipid binding phosphatidylinositol binding phosphatidylinositol-3-phosphate binding phosphatidylinositol phosphate binding cytoskeletal protein binding protein binding cell adhesion molecule binding cadherin binding involved in cell-cell adhesion cadherin binding cell adhesion mediator activity cell-cell adhesion mediator activity calcium-dependent phospholipid binding identical protein binding modified amino acid binding phosphatidylserine binding cation binding ion binding calcium ion binding metal ion binding small molecule binding enzyme binding protease binding RNA binding nucleic acid binding phosphatidylinositol-4,5-bisphosphate binding anion binding phosphatidylinositol bisphosphate binding enzyme regulator activity peptidase activity peptidase regulator activity catalytic activity, acting on a protein serine hydrolase activity serine-type endopeptidase inhibitor activity hydrolase activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity molecular function inhibitor activity molecular function regulator activity serine-type peptidase activity serine-type endopeptidase activity catalytic activity endopeptidase activity S100 protein binding calcium-dependent protein binding phospholipase inhibitor activity carboxylic ester hydrolase activity phospholipase activity lipase activity phospholipase A2 activity phospholipase A2 inhibitor activity hydrolase activity, acting on ester bonds lipase inhibitor activity	regulation of postsynaptic membrane neurotransmitter receptor levels biological regulation regulation of biological quality cellular localization transport endosome to lysosome transport intracellular transport lysosomal transport establishment of localization vesicle-mediated transport localization establishment of localization in cell cellular process vacuolar transport regulation of postsynaptic membrane neurotransmitter receptor levels biological regulation regulation of biological quality cellular localization transport endosome to lysosome transport intracellular transport lysosomal transport establishment of localization vesicle-mediated transport localization establishment of localization in cell cellular process vacuolar transport establishment of lymphocyte polarity multicellular organismal process cell activation establishment or maintenance of cell polarity natural killer cell activation lymphocyte activation leukocyte activation establishment of cell polarity immune system process establishment of natural killer cell polarity cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling signal transduction cell communication protein localization establishment of protein localization nitrogen compound transport protein transport cellular macromolecule localization macromolecule localization intracellular protein transport developmental process regulation of cellular component organization regulation of developmental process nervous system development developmental maturation synapse maturation cellular component organization regulation of synapse organization multicellular organism development regulation of synapse maturation cell junction organization anatomical structure development regulation of synapse structure or activity synapse organization cellular component organization or biogenesis system development endosomal transport localization within membrane endocytic recycling vesicle-mediated transport to the plasma membrane regulation of multicellular organismal development cellular developmental process cell development regulation of neurogenesis regulation of cell differentiation regulation of cell development regulation of nervous system development neurogenesis cell differentiation regulation of multicellular organismal process regulation of protein maturation positive regulation of protein maturation positive regulation of protein metabolic process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of protein processing protein maturation regulation of primary metabolic process positive regulation of metabolic process positive regulation of plasminogen activation regulation of proteolysis positive regulation of biosynthetic process proteolysis regulation of plasminogen activation positive regulation of macromolecule metabolic process protein metabolic process plasminogen activation positive regulation of cellular process zymogen activation regulation of biosynthetic process regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of proteolysis regulation of protein processing protein processing metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process regulation of body fluid levels regulation of response to external stimulus negative regulation of biological process regulation of response to wounding regulation of coagulation response to stress regulation of response to stress coagulation response to wounding regulation of hemostasis wound healing negative regulation of response to stimulus negative regulation of wound healing regulation of blood coagulation negative regulation of blood coagulation hemostasis response to external stimulus negative regulation of response to wounding blood coagulation negative regulation of hemostasis fibrinolysis negative regulation of coagulation regulation of response to stimulus negative regulation of response to external stimulus regulation of wound healing negative regulation of multicellular organismal process regulation of localization import into cell receptor internalization negative regulation of transport negative regulation of endocytosis regulation of receptor internalization negative regulation of cellular process regulation of endocytosis negative regulation of cellular component organization regulation of transport negative regulation of receptor-mediated endocytosis regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport endocytosis receptor-mediated endocytosis negative regulation of receptor internalization positive regulation of organelle organization positive regulation of cellular component organization membrane fusion organelle membrane fusion regulation of vesicle fusion vesicle organization membrane organization regulation of organelle organization organelle fusion organelle organization positive regulation of transport positive regulation of vesicle fusion vesicle fusion collagen fibril organization extracellular matrix organization supramolecular fiber organization extracellular structure organization external encapsulating structure organization positive regulation of low-density lipoprotein particle clearance regulation of plasma lipoprotein particle levels regulation of low-density lipoprotein particle clearance positive regulation of lipoprotein particle clearance plasma lipoprotein particle clearance regulation of lipoprotein particle clearance positive regulation of multicellular organismal process low-density lipoprotein particle clearance regulation of receptor-mediated endocytosis involved in cholesterol transport positive regulation of intracellular lipid transport positive regulation of intracellular cholesterol transport regulation of intracellular cholesterol transport positive regulation of endocytosis sterol transport positive regulation of receptor-mediated endocytosis regulation of intracellular transport regulation of sterol transport intracellular lipid transport lipid transport positive regulation of lipid transport cholesterol transport positive regulation of sterol transport regulation of intracellular sterol transport intracellular cholesterol transport regulation of lipid transport positive regulation of receptor-mediated endocytosis involved in cholesterol transport organic hydroxy compound transport intracellular sterol transport receptor-mediated endocytosis involved in cholesterol transport positive regulation of intracellular transport positive regulation of intracellular sterol transport regulation of cholesterol transport positive regulation of cholesterol transport regulation of intracellular lipid transport lipid localization positive regulation of lipid localization regulation of cellular localization regulation of lipid localization vesicle budding from membrane cellular component biogenesis cellular component assembly membrane raft organization membrane biogenesis membrane raft assembly membrane assembly mRNA transcription by RNA polymerase II RNA metabolic process nucleobase-containing compound biosynthetic process mRNA transcription mRNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II myeloid leukocyte differentiation hemopoiesis animal organ development osteoclast development skeletal system development myeloid cell differentiation bone cell development osteoclast differentiation myeloid cell development bone development leukocyte differentiation regulation of protein binding positive regulation of molecular function regulation of molecular function regulation of receptor binding positive regulation of protein binding regulation of binding positive regulation of receptor binding positive regulation of low-density lipoprotein particle receptor binding positive regulation of binding positive regulation of low-density lipoprotein receptor activity positive regulation of DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription vacuole organization positive regulation of vacuole organization regulation of vacuole organization cell adhesion cell-matrix adhesion cell-substrate adhesion receptor catabolic process catabolic process macromolecule catabolic process negative regulation of protein catabolic process negative regulation of low-density lipoprotein particle receptor catabolic process receptor metabolic process regulation of low-density lipoprotein particle receptor catabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of catabolic process negative regulation of receptor catabolic process negative regulation of metabolic process low-density lipoprotein particle receptor catabolic process protein catabolic process regulation of catabolic process low-density lipoprotein receptor particle metabolic process regulation of receptor catabolic process regulation of protein catabolic process blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development anatomical structure morphogenesis tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development positive regulation of secretion by cell positive regulation of exocytosis regulation of secretion by cell secretion by cell positive regulation of secretion secretion export from cell regulation of secretion exocytosis regulation of exocytosis response to activity apoptotic process cell death programmed cell death epithelial cell apoptotic process respiratory tube development lung development respiratory system development regulation of signaling regulation of receptor recycling receptor recycling positive regulation of receptor recycling positive regulation of signaling plasma membrane repair regulation of plasma membrane organization plasma membrane organization regulation of plasma membrane repair positive regulation of plasma membrane repair endomembrane system organization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle intracellular membrane-bounded organelle synapse cell junction glutamatergic synapse early endosome endosome intracellular vesicle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle intracellular membrane-bounded organelle synapse cell junction glutamatergic synapse early endosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle vesicle cell periphery immunological synapse plasma membrane membrane postsynaptic recycling endosome recycling endosome postsynaptic endosome postsynapse postsynaptic early endosome endosome membrane early endosome membrane cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane organelle membrane Schaffer collateral - CA1 synapse cornified envelope basement membrane extracellular matrix external encapsulating structure extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle collagen-containing extracellular matrix myelin sheath adaxonal region myelin sheath sarcolemma basal part of cell basal plasma membrane plasma membrane region basolateral plasma membrane late endosome membrane late endosome cell-cell junction adherens junction anchoring junction PCSK9-AnxA2 complex protein-containing complex vacuolar membrane lytic vacuole vacuole lytic vacuole membrane lysosomal membrane lysosome plasma membrane protein complex membrane protein complex midbody nucleus membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear lumen nuclear matrix pigment granule melanosome AnxA2-p11 complex RNA polymerase II transcription regulator complex nuclear protein-containing complex transcription regulator complex cell surface cytoplasmic vesicle lumen vacuolar lumen vesicle lumen azurophil granule secretory granule lumen azurophil granule lumen secretory granule primary lysosome secretory vesicle compact myelin Schmidt-Lanterman incisure lipid droplet membraneless organelle intracellular membraneless organelle
B	Envelope small membrane protein	-	virion assembly viral budding from Golgi membrane viral process viral budding viral life cycle disruption of cellular anatomical structure in another organism biological process involved in interspecies interaction between organisms disruption of anatomical structure in another organism	cellular anatomical structure membrane host cellular component host intracellular part host cell Golgi membrane host cell Golgi apparatus host cell membrane host cell cytoplasm part host cell cytoplasm host cell part host cell endomembrane system host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR037835	SNX27, RA domain	Domain
A	IPR001683	Phox homology	Domain
A	IPR000159	Ras-associating domain	Domain
A	IPR037827	SNX27, atypical FERM-like domain	Domain
A	IPR037833	SNX27, PX domain	Domain
A	IPR036034	PDZ superfamily	Homologous Superfamily
A	IPR036871	PX domain superfamily	Homologous Superfamily
A	IPR001478	PDZ domain	Domain
A	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
A	IPR002389	Annexin A2	Family
A	IPR018252	Annexin repeat, conserved site	Conserved Site
A	IPR037104	Annexin superfamily	Homologous Superfamily
A	IPR018502	Annexin repeat	Repeat
A	IPR001464	Annexin	Family
B	IPR044379	Envelope small membrane protein, MERS-CoV-like	Family
B	IPR043506	Envelope small membrane protein, betacoronavirus	Family
B	IPR003873	Envelope small membrane protein, coronavirus	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P07355	attention deficit hyperactivity disorder, inattentive type lung cancer myocardial infarction psoriasis heart disease malignant ependymoma osteosarcoma rheumatoid arthritis large cell medulloblastoma medulloblastoma Pick disease acute myeloid leukemia squamous cell carcinoma malignant mesothelioma Neoplasm Invasiveness attention deficit hyperactivity disorder, inattentive type lung cancer myocardial infarction psoriasis heart disease malignant ependymoma osteosarcoma rheumatoid arthritis large cell medulloblastoma medulloblastoma Pick disease acute myeloid leukemia squamous cell carcinoma malignant mesothelioma Neoplasm Invasiveness liver cancer osteoporosis liver neoplasm malignant pancreatic neoplasm medulloblastoma pancreatic ductal adenocarcinoma Duchenne muscular dystrophy pilocytic astrocytoma lung benign neoplasm malignant ependymoma atypical teratoid rhabdoid tumor oral cavity neoplasm pancreatic intraductal papillary-mucinous carcinoma glioblastoma pituitary cancer juvenile dermatomyositis lung carcinoma malignant glioma mammary neoplasms, animal myopathy Becker muscular dystrophy chronic kidney disease ovarian cancer drug-induced liver injury pancreatic intraductal papillary-mucinous neoplasm plasma cell myeloma limb-girdle muscular dystrophy subependymal giant cell astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.