7RUT | pdb_00007rut

Structure of Human ATP:Cobalamin Adenosyltransferase R190C bound to ATP

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth E]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064693	3001354	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064693	3001354	SCOP2B (2022-06-29)
C [auth F]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064693	3001354	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064693	3001354	SCOP2B (2022-06-29)
E [auth A]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064693	3001354	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Cobalamin adenosyltransferase-like	8064693	3001354	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth E]	Cob_adeno_trans	e7rutE1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: Cob_adeno_trans	ECOD (1.6)
B [auth C]	Cob_adeno_trans	e7rutC1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: Cob_adeno_trans	ECOD (1.6)
C [auth F]	Cob_adeno_trans	e7rutF1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: Cob_adeno_trans	ECOD (1.6)
D [auth B]	Cob_adeno_trans	e7rutB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: Cob_adeno_trans	ECOD (1.6)
E [auth A]	Cob_adeno_trans	e7rutA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: Cob_adeno_trans	ECOD (1.6)
F [auth D]	Cob_adeno_trans	e7rutD1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: Cobalamin adenosyltransferase (From Topology)	T: Cobalamin adenosyltransferase	F: Cob_adeno_trans	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], F [auth D]	PF01923	Cobalamin adenosyltransferase (Cob_adeno_trans)	Cobalamin adenosyltransferase	Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion ...	Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation [1].The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12 [2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], F [auth D]	Corrinoid adenosyltransferase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding vitamin binding cobalamin binding tetrapyrrole binding transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity corrinoid adenosyltransferase activity	cobalamin metabolic process tetrapyrrole metabolic process small molecule metabolic process metabolic process cellular process water-soluble vitamin metabolic process vitamin metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], F [auth D]	IPR029499	Corrinoid adenosyltransferase, PduO-type	Family
A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], F [auth D]	IPR036451	Cobalamin adenosyltransferase-like superfamily	Homologous Superfamily
A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], F [auth D]	IPR016030	Cobalamin adenosyltransferase-like	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], A [auth E], B [auth C], C [auth F], D [auth B], E [auth A], F [auth D]	Pharos: Q96EY8	methylmalonic acidemia vitamin B12-responsive methylmalonic acidemia type cblB depressive disorder inborn errors of metabolism pancreatic ductal adenocarcinoma heart disease inherited organic acidemia Methylmalonic aciduria cblB type porokeratosis 3, disseminated superficial actinic type intellectual disability ovarian cancer Sjogren syndrome

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.