7WG6

Neutral Omicron Spike Trimer


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilySARS coronavirus receptor-binding domain-like8092467 3001706 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyCoronavirus S2 glycoprotein stalk-like8092471 3000282 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyCoronavirus S1 glycoprotein domain C-like8092661 3002615 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyConcanavalin A-like lectins/glucanases8092469 3000120 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyCoronavirus spike S2 glycoprotein connector domain-like8092473 3002562 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyCoronavirus S1 glycoprotein domain D-like8092663 3002616 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyCoronavirus S2 glycoprotein stalk-like8092471 3000282 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyCoronavirus spike S2 glycoprotein connector domain-like8092473 3002562 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyCoronavirus S1 glycoprotein domain C-like8092661 3002615 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilySARS coronavirus receptor-binding domain-like8092467 3001706 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyCoronavirus S1 glycoprotein domain D-like8092663 3002616 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyConcanavalin A-like lectins/glucanases8092469 3000120 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCoronavirus S1 glycoprotein domain D-like8092663 3002616 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySARS coronavirus receptor-binding domain-like8092467 3001706 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCoronavirus S1 glycoprotein domain C-like8092661 3002615 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCoronavirus S2 glycoprotein stalk-like8092471 3000282 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyConcanavalin A-like lectins/glucanases8092469 3000120 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCoronavirus spike S2 glycoprotein connector domain-like8092473 3002562 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]Spike_NTDe7wg6B1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: Spike_NTDECOD (1.6)
A [auth B]Spike_rec_bind_1e7wg6B4 A: beta complex topologyX: Beta domain of coronavirus spike glycoprotein (From Topology)H: Beta domain of coronavirus spike glycoprotein (From Topology)T: Beta domain of coronavirus spike glycoproteinF: Spike_rec_bind_1ECOD (1.6)
A [auth B]Spike_rec_binde7wg6B3 A: a+b three layersX: Coronavirus spike protein receptor-binding domain (From Homology)H: Coronavirus spike protein receptor-binding domainT: Beta-coronavirus spike protein receptor-binding domainF: Spike_rec_bindECOD (1.6)
A [auth B]Corona_S2e7wg6B2 A: a+b complex topologyX: S2 subunit of coronavirus spike glycoprotein (From Topology)H: S2 subunit of coronavirus spike glycoprotein (From Topology)T: S2 subunit of coronavirus spike glycoproteinF: Corona_S2ECOD (1.6)
B [auth A]Spike_NTDe7wg6A3 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: Spike_NTDECOD (1.6)
B [auth A]Spike_rec_bind_1e7wg6A2 A: beta complex topologyX: Beta domain of coronavirus spike glycoprotein (From Topology)H: Beta domain of coronavirus spike glycoprotein (From Topology)T: Beta domain of coronavirus spike glycoproteinF: Spike_rec_bind_1ECOD (1.6)
B [auth A]Spike_rec_binde7wg6A4 A: a+b three layersX: Coronavirus spike protein receptor-binding domain (From Homology)H: Coronavirus spike protein receptor-binding domainT: Beta-coronavirus spike protein receptor-binding domainF: Spike_rec_bindECOD (1.6)
B [auth A]Corona_S2e7wg6A1 A: a+b complex topologyX: S2 subunit of coronavirus spike glycoprotein (From Topology)H: S2 subunit of coronavirus spike glycoprotein (From Topology)T: S2 subunit of coronavirus spike glycoproteinF: Corona_S2ECOD (1.6)
CSpike_NTDe7wg6C3 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: Spike_NTDECOD (1.6)
CSpike_rec_bind_1e7wg6C4 A: beta complex topologyX: Beta domain of coronavirus spike glycoprotein (From Topology)H: Beta domain of coronavirus spike glycoprotein (From Topology)T: Beta domain of coronavirus spike glycoproteinF: Spike_rec_bind_1ECOD (1.6)
CSpike_rec_binde7wg6C1 A: a+b three layersX: Coronavirus spike protein receptor-binding domain (From Homology)H: Coronavirus spike protein receptor-binding domainT: Beta-coronavirus spike protein receptor-binding domainF: Spike_rec_bindECOD (1.6)
CCorona_S2e7wg6C2 A: a+b complex topologyX: S2 subunit of coronavirus spike glycoprotein (From Topology)H: S2 subunit of coronavirus spike glycoprotein (From Topology)T: S2 subunit of coronavirus spike glycoproteinF: Corona_S2ECOD (1.6)

Gene Product Annotation Gene Product Annotation

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B],
B [auth A],
C
Spike glycoprotein