7X9S | pdb_00007x9s

Crystal structure of a complex between the antirepressor GmaR and the transcriptional repressor MogR

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Homeodomain-like	8106673	3000001	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Homeodomain-like	8106673	3000001	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Homeodomain-like	8106673	3000001	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	TPR_11_6	e7x9sA1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: TPR_11_6	ECOD (1.6)
C	TPR_11_6	e7x9sC1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: TPR_11_6	ECOD (1.6)
E	TPR_11_6	e7x9sE1	A: alpha superhelices	X: Repetitive alpha hairpins	H: ARM repeat (From Topology)	T: ARM repeat	F: TPR_11_6	ECOD (1.6)
B	MogR_DNAbind_C	e7x9sB2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: MogR_DNAbind_C	ECOD (1.6)
B	MogR_DNAbind_N	e7x9sB1	A: alpha arrays	X: N-terminal domain in MogR repressor (From Topology)	H: N-terminal domain in MogR repressor (From Topology)	T: N-terminal domain in MogR repressor	F: MogR_DNAbind_N	ECOD (1.6)
D	MogR_DNAbind_C	e7x9sD1	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: MogR_DNAbind_C	ECOD (1.6)
D	MogR_DNAbind_N	e7x9sD2	A: alpha arrays	X: N-terminal domain in MogR repressor (From Topology)	H: N-terminal domain in MogR repressor (From Topology)	T: N-terminal domain in MogR repressor	F: MogR_DNAbind_N	ECOD (1.6)
F	MogR_DNAbind_C	e7x9sF2	A: alpha arrays	X: HTH	H: HTH	T: tri-helical	F: MogR_DNAbind_C	ECOD (1.6)
F	MogR_DNAbind_N	e7x9sF1	A: alpha arrays	X: N-terminal domain in MogR repressor (From Topology)	H: N-terminal domain in MogR repressor (From Topology)	T: N-terminal domain in MogR repressor	F: MogR_DNAbind_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.120.1030	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Motility repressor MogR, DNA-binding domain	CATH (utative)
F	1.20.120.1030	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Motility repressor MogR, DNA-binding domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F	PF12181	DNA binding domain of the motility gene repressor (MogR) (MogR_DNAbind)	DNA binding domain of the motility gene repressor (MogR)	This domain family is found in bacteria, and is approximately 150 amino acids in length. MogR is involved in repression of transcription of the flagellar gene in Listeria bacteria. This allows a phenotypical switch from an extracellular bacterium to ...	This domain family is found in bacteria, and is approximately 150 amino acids in length. MogR is involved in repression of transcription of the flagellar gene in Listeria bacteria. This allows a phenotypical switch from an extracellular bacterium to an intracellular pathogen. MogR binds AT rich flagellar gene promoter regions upstream of the flagellar gene. These regions follow the pattern 5'-TTTTNNNNNAAAA-3'. This domain is the DNA binding domain of MogR.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E	GmaR	-	-	-
B, D, F	Motility gene repressor MogR	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process	protein-containing complex protein-DNA complex cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, C, E	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily
A, C, E	IPR019734	Tetratricopeptide repeat	Repeat
A, C, E	IPR001173	Glycosyltransferase 2-like	Domain
B, D, F	IPR021009	Motility repressor MogR, DNA-binding domain	Domain
B, D, F	IPR038245	MogR, DNA-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.