8IR9

XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 30-microsecond delay

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
T [auth b]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
C,
U [auth c]		PF00421Photosystem II protein (PSII)Photosystem II protein- Family
D,
V [auth d]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
E,
W [auth e]		PF00283Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits (Cytochrom_B559)Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits- Family
E,
W [auth e]		PF00284Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit (Cytochrom_B559a)Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit- Family
G [auth H],
Y [auth h]		PF00737Photosystem II 10 kDa phosphoprotein (PsbH)Photosystem II 10 kDa phosphoprotein- Family
H [auth I],
Z [auth i]		PF02532Photosystem II reaction centre I protein (PSII 4.8 kDa protein) (PsbI)Photosystem II reaction centre I protein (PSII 4.8 kDa protein)- Family
AA [auth j],
I [auth J]		PF01788PsbJ (PsbJ)PsbJ- Family
BA [auth k],
J [auth K]		PF02533Photosystem II 4 kDa reaction centre component (PsbK)Photosystem II 4 kDa reaction centre component- Family
DA [auth m],
L [auth M]		PF05151Photosystem II reaction centre M protein (PsbM) (PsbM)Photosystem II reaction centre M protein (PsbM)- Family
FA [auth t],
N [auth T]		PF01405Photosystem II reaction centre T protein (PsbT)Photosystem II reaction centre T protein- Family
GA [auth u],
O [auth U]		PF06514Photosystem II 12 kDa extrinsic protein (PsbU) (PsbU)Photosystem II 12 kDa extrinsic protein (PsbU)- Family
HA [auth v],
P [auth V]		PF14495Cytochrome c-550 domain (Cytochrom_C550)Cytochrome c-550 domainThis domain is a heme binding cytochrome known as cytochrome c550, or cytochrome c549, or PsbV [1].Domain
IA [auth x],
Q [auth X]		PF06596Photosystem II reaction centre X protein (PsbX) (PsbX)Photosystem II reaction centre X protein (PsbX)- Family
KA [auth Z],
MA [auth z]		PF01737YCF9 (Ycf9)YCF9- Family
LA [auth R]PF06298Photosystem II protein Y (PsbY) (PsbY)Photosystem II protein Y (PsbY)- Family
A,
S [auth a]		PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B,
T [auth b]		Photosystem II CP47 reaction center protein
C,
U [auth c]		Photosystem II CP43 reaction center protein
D,
V [auth d]		Photosystem II D2 protein
E,
W [auth e]		Cytochrome b559 subunit alpha
F,
X [auth f]		Cytochrome b559 subunit beta
G [auth H],
Y [auth h]		Photosystem II reaction center protein H
H [auth I],
Z [auth i]		Photosystem II reaction center protein I-
AA [auth j],
I [auth J]		Photosystem II reaction center protein J-
BA [auth k],
J [auth K]		Photosystem II reaction center protein K-
CA [auth l],
K [auth L]		Photosystem II reaction center protein L-
DA [auth m],
L [auth M]		Photosystem II reaction center protein M-
EA [auth o],
M [auth O]		Photosystem II manganese-stabilizing polypeptide
FA [auth t],
N [auth T]		Photosystem II reaction center protein T-
GA [auth u],
O [auth U]		Photosystem II 12 kDa extrinsic protein-
HA [auth v],
P [auth V]		Cytochrome c-550
IA [auth x],
Q [auth X]		Photosystem II reaction center protein X-
JA [auth y],
R [auth Y]		Photosystem II reaction center protein Ycf12-
KA [auth Z],
MA [auth z]		Photosystem II reaction center protein Z-
LA [auth R]Photosystem II protein Y
A,
S [auth a]		Photosystem II protein D1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B,
T [auth b]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
T [auth b]		IPR000932Photosystem antenna protein-likeFamily
B,
T [auth b]		IPR017486Photosystem II CP47 reaction centre proteinFamily
C,
U [auth c]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
U [auth c]		IPR000932Photosystem antenna protein-likeFamily
C,
U [auth c]		IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
U [auth c]		IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
D,
V [auth d]		IPR005868Photosystem II D2Family
D,
V [auth d]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D,
V [auth d]		IPR000484Photosynthetic reaction centre, L/MFamily
E,
W [auth e]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
E,
W [auth e]		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
E,
W [auth e]		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
E,
W [auth e]		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
E,
W [auth e]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
F,
X [auth f]		IPR006241Photosystem II cytochrome b559, beta subunitFamily
F,
X [auth f]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
F,
X [auth f]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth H],
Y [auth h]		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
G [auth H],
Y [auth h]		IPR001056Photosystem II reaction centre protein HFamily
H [auth I],
Z [auth i]		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
H [auth I],
Z [auth i]		IPR003686Photosystem II PsbIFamily
AA [auth j],
I [auth J]		IPR002682Photosystem II PsbJFamily
AA [auth j],
I [auth J]		IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
BA [auth k],
J [auth K]		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
BA [auth k],
J [auth K]		IPR003687Photosystem II PsbKFamily
CA [auth l],
K [auth L]		IPR003372Photosystem II PsbLFamily
CA [auth l],
K [auth L]		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
DA [auth m],
L [auth M]		IPR007826Photosystem II PsbMFamily
DA [auth m],
L [auth M]		IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
EA [auth o],
M [auth O]		IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
EA [auth o],
M [auth O]		IPR002628Photosystem II extrinsic protein OFamily
FA [auth t],
N [auth T]		IPR001743Photosystem II PsbTFamily
FA [auth t],
N [auth T]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
GA [auth u],
O [auth U]		IPR010527Photosystem II PsbU, oxygen evolving complexFamily
HA [auth v],
P [auth V]		IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
HA [auth v],
P [auth V]		IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
HA [auth v],
P [auth V]		IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
HA [auth v],
P [auth V]		IPR009056Cytochrome c-like domainDomain
HA [auth v],
P [auth V]		IPR029490Cytochrome c-550 domainDomain
IA [auth x],
Q [auth X]		IPR009518Photosystem II PsbXFamily
IA [auth x],
Q [auth X]		IPR023431Photosystem II PsbX, type 1 subfamilyFamily
JA [auth y],
R [auth Y]		IPR010284Photosystem II reaction center protein Ycf12Family
KA [auth Z],
MA [auth z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
KA [auth Z],
MA [auth z]		IPR002644Photosystem II PsbZ, reaction centreFamily
LA [auth R]IPR009388Photosystem II PsbYFamily
A,
S [auth a]		IPR005867Photosystem II protein D1Family
A,
S [auth a]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
S [auth a]		IPR000484Photosynthetic reaction centre, L/MFamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
H [auth I],
Z [auth i]		FME Parent Component: MET

RESID:  AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
DA [auth m],
L [auth M]		FME Parent Component: MET

RESID:  AA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
FA [auth t],
N [auth T]		FME Parent Component: MET

RESID:  AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891