8JZD | pdb_00008jzd

Crystal structure of Escherichia coli NarJ in complex with the signal peptide of E. coli NarG

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF02613	Nitrate reductase delta subunit (Nitrate_red_del)	Nitrate reductase delta subunit	-	Family
B, D	PF14710	Respiratory nitrate reductase alpha N-terminal (Nitr_red_alph_N)	Respiratory nitrate reductase alpha N-terminal	This is the N-terminal tail of the respiratory nitrate reductase alpha chain. The nitrate reductase complex is a dimer of heterotrimers each consisting of an alpha, beta and gamma chain. The N-terminal tail of the alpha chain interacts with the beta ...	This is the N-terminal tail of the respiratory nitrate reductase alpha chain. The nitrate reductase complex is a dimer of heterotrimers each consisting of an alpha, beta and gamma chain. The N-terminal tail of the alpha chain interacts with the beta chain and contributes to the stability of the heterotrimer [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	Nitrate reductase molybdenum cofactor assembly chaperone NarJ	unfolded protein binding protein binding binding metallochaperone activity molecular carrier activity	nitrate assimilation ammonium ion metabolic process nitrogen cycle metabolic process oxoacid metabolic process metabolic process cellular process small molecule metabolic process organic acid metabolic process nitrate metabolic process reactive nitrogen species metabolic process cellular component organization cellular component biogenesis cellular component assembly chaperone-mediated protein complex assembly nitrate assimilation ammonium ion metabolic process nitrogen cycle metabolic process oxoacid metabolic process metabolic process cellular process small molecule metabolic process organic acid metabolic process nitrate metabolic process reactive nitrogen species metabolic process cellular component organization cellular component biogenesis cellular component assembly chaperone-mediated protein complex assembly protein-containing complex organization protein-containing complex assembly cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm
B, D	Respiratory nitrate reductase 1 alpha chain	nitrate reductase activity oxidoreductase activity oxidoreductase activity, acting on other nitrogenous compounds as donors catalytic activity binding molybdopterin cofactor binding iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding electron transfer activity cation binding ion binding metal ion binding nitrate reductase activity oxidoreductase activity oxidoreductase activity, acting on other nitrogenous compounds as donors catalytic activity binding molybdopterin cofactor binding iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding electron transfer activity cation binding ion binding metal ion binding nitrate reductase (quinone) activity	anaerobic electron transport chain cellular respiration energy derivation by oxidation of organic compounds respiratory electron transport chain electron transport chain metabolic process cellular process generation of precursor metabolites and energy anaerobic respiration oxoacid metabolic process small molecule metabolic process organic acid metabolic process nitrate metabolic process reactive nitrogen species metabolic process anaerobic electron transport chain cellular respiration energy derivation by oxidation of organic compounds respiratory electron transport chain electron transport chain metabolic process cellular process generation of precursor metabolites and energy anaerobic respiration oxoacid metabolic process small molecule metabolic process organic acid metabolic process nitrate metabolic process reactive nitrogen species metabolic process nitrate assimilation ammonium ion metabolic process nitrogen cycle metabolic process	cellular anatomical structure membrane respiratory chain complex protein-containing complex NarGHI complex catalytic complex plasma membrane protein complex plasma membrane nitrate reductase complex membrane protein complex cell periphery oxidoreductase complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR020945	DMSO/Nitrate reductase chaperone	Family
A, C	IPR036411	TorD-like superfamily	Homologous Superfamily
A, C	IPR003765	Nitrate reductase chaperone, NarJ	Family
B, D	IPR006963	Molybdopterin oxidoreductase, 4Fe-4S domain	Domain
B, D	IPR037943	Nitrate reductase alpha subunit-like, MopB domain	Domain
B, D	IPR006657	Molybdopterin dinucleotide-binding domain	Domain
B, D	IPR006656	Molybdopterin oxidoreductase	Domain
B, D	IPR006468	Nitrate reductase, alpha subunit	Family
B, D	IPR009010	Aspartate decarboxylase-like domain superfamily	Homologous Superfamily
B, D	IPR006655	Molybdopterin oxidoreductase, prokaryotic, conserved site	Conserved Site
B, D	IPR050123	Prokaryotic molybdopterin-containing oxidoreductase	Family
B, D	IPR027467	Molybdopterin oxidoreductase, molybdopterin cofactor binding site	Binding Site
B, D	IPR028189	Nitrate reductase, alpha subunit, N-terminal	Domain
B, D	IPR044906	Nitrate reductase, alpha subunit, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.