SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 1 mM AlcR U-15N, 1.1 mM double stranded DNA | 20 mM phosphate buffer; 90%H2O, 10%D2O; pH 5.9 | 5.9 | 1 atm | 293 | ||
| 2 | 3D_15N-separated_NOESY | 1 mM AlcR U-15N, 1.1 mM double stranded DNA | 20 mM phosphate buffer; 90%H2O, 10%D2O; pH 5.9 | 5.9 | 1 atm | 293 | ||
| 3 | HNHA | 1 mM AlcR U-15N, 1.1 mM double stranded DNA | 20 mM phosphate buffer; 90%H2O, 10%D2O; pH 5.9 | 5.9 | 1 atm | 293 | ||
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | DRX | 800 |
| 2 | Bruker | DMX | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| distance geometry, simulated annealing | 1142 noe-derived constraints, 76 h-bond constraints, 33 phi angle restraints, 118 loose angle restraints on the DNA backbone | XwinNMR |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | The submitted conformer models are the 10 structures with the lowest energy. |
| Conformers Calculated Total Number | 20 |
| Conformers Submitted Total Number | 10 |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | XwinNMR | 2.1 | |
| 2 | processing | Gifa | 4 | Delsuc, M.A. |
| 3 | structure solution | DIANA | Gntert | |
| 4 | refinement | X-PLOR | 3.1 | Brunger |














