Experiment: 1Y0B

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.5	298	Bis-tris, NaCl, PEG3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
2.2	42.6

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 42.503	α = 90
b = 115.902	β = 94.3
c = 73.985	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	150	CCD	CUSTOM-MADE	SBC2	2003-02-18	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-ID	0.97981,0.97995, 0.990	APS	19-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	34.23	88.5			58399	58399

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.846	49.66

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	1.8	20	55482	55482	2903	88.48	0.1807	0.1807	0.17831	0.1764	0.22818	0.2238	RANDOM	22.097

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.82		0.48	-1.44		2.34

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.406
r_dihedral_angle_4_deg	20.176
r_dihedral_angle_3_deg	13.666
r_dihedral_angle_1_deg	5.466
r_scangle_it	2.488
r_angle_refined_deg	1.853
r_scbond_it	1.536
r_mcangle_it	0.845
r_mcbond_it	0.442
r_nbtor_refined	0.297

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	39.406
r_dihedral_angle_4_deg	20.176
r_dihedral_angle_3_deg	13.666
r_dihedral_angle_1_deg	5.466
r_scangle_it	2.488
r_angle_refined_deg	1.853
r_scbond_it	1.536
r_mcangle_it	0.845
r_mcbond_it	0.442
r_nbtor_refined	0.297
r_nbd_refined	0.194
r_chiral_restr	0.167
r_symmetry_vdw_refined	0.157
r_metal_ion_refined	0.146
r_xyhbond_nbd_refined	0.108
r_symmetry_hbond_refined	0.096
r_bond_refined_d	0.008
r_gen_planes_refined	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5837
Nucleic Acid Atoms
Solvent Atoms	840
Heterogen Atoms	120

Software

Software
Software Name	Purpose
REFMAC	refinement
d*TREK	data reduction
HKL-2000	data scaling
SOLVE	phasing
autoSHARP	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.