2CYF

The Crystal Structure of Canavalia Maritima Lectin (ConM) in Complex with Trehalose and Maltose


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5293Hepes-Na, ammonium sulfate, PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.345.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.033α = 90
b = 97.332β = 90
c = 71.086γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2004-08-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE D03B-MX11.43LNLSD03B-MX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.89.9999.97044595083111
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.9199.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.89.981.84361739189436299.850.197990.193550.1860.23802RANDOM17.172
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.03-0.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.677
r_dihedral_angle_4_deg15.463
r_dihedral_angle_3_deg14.729
r_dihedral_angle_1_deg7.966
r_scangle_it3.644
r_scbond_it2.456
r_angle_refined_deg1.869
r_mcangle_it1.633
r_mcbond_it1.008
r_angle_other_deg0.905
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.677
r_dihedral_angle_4_deg15.463
r_dihedral_angle_3_deg14.729
r_dihedral_angle_1_deg7.966
r_scangle_it3.644
r_scbond_it2.456
r_angle_refined_deg1.869
r_mcangle_it1.633
r_mcbond_it1.008
r_angle_other_deg0.905
r_symmetry_hbond_refined0.364
r_symmetry_vdw_refined0.306
r_mcbond_other0.286
r_nbd_refined0.253
r_nbd_other0.22
r_xyhbond_nbd_refined0.217
r_symmetry_vdw_other0.215
r_nbtor_refined0.198
r_chiral_restr0.113
r_nbtor_other0.103
r_xyhbond_nbd_other0.08
r_metal_ion_refined0.078
r_bond_refined_d0.019
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3502
Nucleic Acid Atoms
Solvent Atoms327
Heterogen Atoms48

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
CCP4data scaling
AMoREphasing