2FP0

human ADP-ribosylhydrolase 3

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2FOZ

Crystallization

Crystal Properties
Matthews coefficient	Solvent content
2.35	47.71

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 57.33	α = 90
b = 60.63	β = 96.43
c = 102.88	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH			M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	EMBL/DESY, HAMBURG BEAMLINE X11	1.50	EMBL/DESY, HAMBURG	X11

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.05	99	99.9			44248	44248

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.05	2.09	100

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2FOZ	2.05	30	44248	42868	869	98.8	0.18856	0.18767	0.23116	RANDOM	45.588

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.61		-2.65	-2.23		1.03

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	37.951
r_dihedral_angle_4_deg	18.274
r_dihedral_angle_3_deg	17.862
r_dihedral_angle_1_deg	6.694
r_scangle_it	6.543
r_scbond_it	4.705
r_angle_refined_deg	1.925
r_mcangle_it	1.869
r_mcbond_it	1.359
r_angle_other_deg	1.023
r_xyhbond_nbd_other	0.51
r_mcbond_other	0.332
r_symmetry_vdw_refined	0.306
r_nbd_refined	0.234
r_symmetry_hbond_refined	0.233
r_symmetry_vdw_other	0.197
r_nbtor_refined	0.19
r_nbd_other	0.181
r_xyhbond_nbd_refined	0.178
r_chiral_restr	0.12
r_nbtor_other	0.093
r_bond_refined_d	0.023
r_gen_planes_refined	0.008
r_bond_other_d	0.003
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5186
Nucleic Acid Atoms
Solvent Atoms	147
Heterogen Atoms	4

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
SHELXS	phasing