ELECTRON MICROSCOPY
Starting Model(s)
| Initial Refinement Model(s) | |||
|---|---|---|---|
| Type | Source | Accession Code | Details |
| experimental model | PDB | 2FSY | |
| Sample |
|---|
| Bacteriophage HK97 Expansion Intermediate IV |
| Sample Components |
| major capsid protein |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | |
| Reported Resolution (Å) | 12 |
| Resolution Method | |
| Other Details | THE ENTIRE STRUCTURE WAS MODELED AS ALA AND GLY. THE MISSING ATOMS ARE SUPPRESSED DUE TO TOO MANY TO LIST. RESIDUES 159 to 172 IN CHAIN G WERE DELE ... |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | I |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 (2FSY) | ||||
| Refinement Space | RECIPROCAL | ||||
| Refinement Protocol | RIGID BODY FIT | ||||
| Refinement Target | vector reciprocal space target and manual correction with O | ||||
| Overall B Value | 374 | ||||
| Fitting Procedure | |||||
| Details | METHOD--Rigid body and manual fitting REFINEMENT PROTOCOL--rigid body, magnification optimized using van der Waals constraints and real-space correl ... | ||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | |||||||||
| Electron Dose (electrons/Å**2) | 15 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | FEI/PHILIPS CM200FEG |
| Minimum Defocus (nm) | |
| Maximum Defocus (nm) | |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | |
| Nominal Magnification | 50000 |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 120 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| MODEL FITTING | CNS | |
| MODEL FITTING | O | |
| RECONSTRUCTION | OTHER | |
