SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 0.8 mM FANA/RNA-1 | 90% H2O/10% D2O | 7 | ambient | 298 | ||
2 | 2D DQF-COSY | 0.8 mM FANA/RNA-1 | 90% H2O/10% D2O | 7 | ambient | 298 | ||
3 | 2D 1H-1H NOESY | 0.8 mM FANA/RNA-1 | 90% H2O/10% D2O | 7 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | Advance | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics, matrix relaxation | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | all calculated structures submitted |
Conformers Calculated Total Number | 10 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm | |
2 | peak picking | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm | |
3 | structure solution | Amber | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm | |
4 | refinement | Amber | Goddard | |
5 | peak picking | Amber | Goddard | |
6 | structure solution | Amber | Goddard | |
7 | refinement | Amber | Koradi, Billeter and Wuthrich | |
8 | peak picking | Amber | Koradi, Billeter and Wuthrich | |
9 | structure solution | Amber | Koradi, Billeter and Wuthrich |