2L0T | pdb_00002l0t

Solution structure of the complex of ubiquitin and the VHS domain of Stam2

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	250 uM [U-99% 15N] Ubiquitin protein, 250 uM [U-99% 15N] VHS domain of Stam2	90% H2O/10% D2O	20	6.8	ambient	288
2	15N R1 AND R2	250 uM [U-99% 15N] Ubiquitin protein, 250 uM [U-99% 15N] VHS domain of Stam2	90% H2O/10% D2O	20	6.8	ambient	288
3	15N{1H} NOE	250 uM [U-99% 15N] Ubiquitin protein, 250 uM [U-99% 15N] VHS domain of Stam2	90% H2O/10% D2O	20	6.8	ambient	288

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Bruker	DRX	900

NMR Refinement
Method	Details	Software
simulated annealing, distance geometry		CNS-HADDOCK

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	300
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	CNS-HADDOCK	1.2	Brunger, Adams, Clore, Gros, Nilges, Read, Dominguez, Boelens, Bonvin
2	chemical shift assignment	Sparky		Goddard
3	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	refinement	CNS-HADDOCK	1.2	Brunger, Adams, Clore, Gros, Nilges, Read, Dominguez, Boelens, Bonvin