2LS5 | pdb_00002ls5

Solution structure of a putative protein disulfide isomerase from Bacteroides thetaiotaomicron


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
115N HSQC1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA, 90% H2O, 10% D2O90% H2O/10% D2O707.41 atm303
215N NOESY-HSQC1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA, 90% H2O, 10% D2O90% H2O/10% D2O707.41 atm303
313C CT-HSQC1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA100% D2O707.41 atm303
4aromatic 13C CT-HSQC1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA100% D2O707.41 atm303
513C NOESY-HSQC1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA100% D2O707.41 atm303
613C aromatic NOESY-HSQC1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA100% D2O707.41 atm303
7HNCO1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA, 90% H2O, 10% D2O90% H2O/10% D2O707.41 atm303
8HNCACO1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA, 90% H2O, 10% D2O90% H2O/10% D2O707.41 atm303
9HNCA1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA, 90% H2O, 10% D2O90% H2O/10% D2O707.41 atm303
10HNCOCA1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA, 90% H2O, 10% D2O90% H2O/10% D2O707.41 atm303
11HNCACB1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA, 90% H2O, 10% D2O90% H2O/10% D2O707.41 atm303
12CBCACONH1 mM [U-13C; U-15N] putative protein disulfide isomerase, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT, 1 mM EDTA, 90% H2O, 10% D2O90% H2O/10% D2O707.41 atm303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAVANCE700
3BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
simulating annealingRefinement in a box of waterCNS
NMR Ensemble Information
Conformer Selection Criteria20 structures for lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsAll 3Ds were acquired using NUS with either the MDDNMR or MDDGUI approach
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger A. T. et.al.
2data analysisARIA2.3Linge, O'Donoghue and Nilges
3processingNMRPipe5.4Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4collectionVnmrJ2.2DVarian
5collectionTopSpin2.1Bruker Biospin
6data analysisCCPN2.1.5CCPN
7peak pickingCCPN2.1.5CCPN
8chemical shift assignmentCCPN2.1.5CCPN
9collectionMddNMR2.0Orekhov, Jaravine, Kazimierczuk
10processingMddNMR2.0Orekhov, Jaravine, Kazimierczuk
11collectionMDDGUI1.0Lemak, Gutmanas, Chitayat, Karra, Fares, Sunnerhagen, Arrowsmith
12processingMDDGUI1.0Lemak, Gutmanas, Chitayat, Karra, Fares, Sunnerhagen, Arrowsmith