2LUD | pdb_00002lud

Solution structure of a conformational mutant of the adhesion protein delta-Bd37 from Babesia divergens

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-15N NOESY	0.45 mM [U-100% 15N] EDK-delta-Bd37	90% H2O/10% D2O	50	6.9	ambient	310
2	3D 1H-15N TOCSY	0.45 mM [U-100% 15N] EDK-delta-Bd37	90% H2O/10% D2O	50	6.9	ambient	310
3	3D HNCA	0.38 mM [U-100% 13C; U-100% 15N] EDK-delta-Bd37	90% H2O/10% D2O	50	6.9	ambient	310
4	3D CBCA(CO)NH	0.38 mM [U-100% 13C; U-100% 15N] EDK-delta-Bd37	90% H2O/10% D2O	50	6.9	ambient	310
5	3D HNCACB	0.38 mM [U-100% 13C; U-100% 15N] EDK-delta-Bd37	90% H2O/10% D2O	50	6.9	ambient	310
6	3D HNCO	0.38 mM [U-100% 13C; U-100% 15N] EDK-delta-Bd37	90% H2O/10% D2O	50	6.9	ambient	310
7	3D HCACO	0.38 mM [U-100% 13C; U-100% 15N] EDK-delta-Bd37	90% H2O/10% D2O	50	6.9	ambient	310
8	3D 1H-13C NOESY aliphatic	0.38 mM [U-100% 13C; U-100% 15N] EDK-delta-Bd37	90% H2O/10% D2O	50	6.9	ambient	310

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	700
2	Bruker	AVANCE	500

NMR Refinement
Method	Details	Software
molecular dynamics, simulated annealing	RECOORD SCRIPTS	Gifa

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	600
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	Gifa	4.44	Delsuc
2	data analysis	CINDY	1.8	Padilla
3	structure solution	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
4	refinement	CNS	1.2	Brunger, Adams, Clore, Gros, Nilges and Read

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.