X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3H47 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.529012% w/v PEG 4K, 0.1 M TRIS pH 8.5, 3% v/v ethylene glycol
Crystal Properties
Matthews coefficientSolvent content
2.6553.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.88α = 90
b = 90.88β = 90
c = 56.58γ = 120
Symmetry
Space GroupP 6

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plate2013-11-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E SUPERBRIGHT1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2114.8793.40.1770.0960.9867.23.912460
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.212.2872.50.4990.2940.47633.4897

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3H472.2214.871245759393.760.24310.24180.2701RANDOM36.167
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.280.140.28-0.92
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.744
r_dihedral_angle_4_deg13.44
r_dihedral_angle_3_deg10.817
r_mcangle_it4.774
r_dihedral_angle_1_deg4.544
r_mcbond_it3.434
r_mcbond_other3.434
r_angle_refined_deg0.918
r_angle_other_deg0.697
r_chiral_restr0.047
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.744
r_dihedral_angle_4_deg13.44
r_dihedral_angle_3_deg10.817
r_mcangle_it4.774
r_dihedral_angle_1_deg4.544
r_mcbond_it3.434
r_mcbond_other3.434
r_angle_refined_deg0.918
r_angle_other_deg0.697
r_chiral_restr0.047
r_bond_refined_d0.006
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1558
Nucleic Acid Atoms
Solvent Atoms76
Heterogen Atoms26

Software

Software
Software NamePurpose
Aimlessdata scaling
PDB_EXTRACTdata extraction
PHASERphasing
REFMACrefinement
iMOSFLMdata reduction