Structure of the trans-(Tyr39-Pro40) form of the Human Secreted Ly-6/uPAR Related Protein-1 (SLURP-1)
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 0.3 mM [U-15N] SLURP-1 | 95% H2O/5% D2O | 10 mM | 4.7 | AMBIENT atm | 310 | Bruker AVANCE III 800 |
| 2 | 2D 1H-1H NOESY | 0.3 mM [U-15N] SLURP-1 | 95% H2O/5% D2O | 10 mM | 4.7 | AMBIENT atm | 310 | Bruker AVANCE III 800 |
| 3 | 3D HNCO | 0.3 mM [U-13C; U-15N] SLURP-1 | 95% H2O/5% D2O | 10 mM | 4.7 | AMBIENT atm | 310 | Bruker AVANCE III 800 |
| 4 | 3D HNCA | 0.3 mM [U-13C; U-15N] SLURP-1 | 95% H2O/5% D2O | 10 mM | 4.7 | AMBIENT atm | 310 | Bruker AVANCE III 800 |
| 5 | 3D HNCACB | 0.3 mM [U-13C; U-15N] SLURP-1 | 95% H2O/5% D2O | 10 mM | 4.7 | AMBIENT atm | 310 | Bruker AVANCE III 800 |
| 9 | 3D HN(CO)CA | 0.3 mM [U-13C; U-15N] SLURP-1 | 95% H2O/5% D2O | 10 mM | 4.7 | AMBIENT atm | 310 | Bruker AVANCE III 800 |
| 8 | 3D 1H-15N TOCSY | 0.3 mM [U-15N] SLURP-1 | 95% H2O/5% D2O | 10 mM | 4.7 | AMBIENT atm | 310 | Bruker AVANCE 700 |
| 7 | 3D HNHA | 0.3 mM [U-15N] SLURP-1 | 95% H2O/5% D2O | 10 mM | 4.7 | AMBIENT atm | 310 | Bruker AVANCE III 800 |
| 6 | 3D HCCH-TOCSY | 0.3 mM [U-13C; U-15N] SLURP-1 | 100% D2O | 10 mM | 4.7 | AMBIENT atm | 310 | Bruker AVANCE 700 |
| 10 | 2D 1H-13C HSQC | 0.3 mM [U-13C; U-15N] SLURP-1 | 95% H2O/5% D2O | 10 mM | 4.7 | AMBIENT atm | 310 | Bruker AVANCE 700 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 800 |
| 2 | Bruker | AVANCE | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | CYANA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the least restraint violations |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (target function) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | structure calculation | CYANA | 3.98.13 | Guntert, Mumenthaler and Wuthrich |
| 2 | chemical shift assignment | CARA | 1.8 | Keller and Wuthrich |
| 3 | collection | TopSpin | Bruker Biospin | |
| 4 | processing | MddNMR | V. Orekhov, V. Jaravine, M. Mayzel, K. Kazimierczuk, Swedish NMR Center, University of Gothenburg | |
| 5 | peak picking | CARA | Keller and Wuthrich | |
