7NR2

The structure of the SBP TarP_Sse in complex with coumarate


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.252900.2 M NaCl, 0.1 M sodium cacodylate pH 6.25 and 1.8 M ammonium sulphate
Crystal Properties
Matthews coefficientSolvent content
2.4649.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 82.84α = 90
b = 88.08β = 92.28
c = 96.58γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-07-10MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.97918, 0.97938DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1350.599.70.0560.06212.53.477509
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.132.1999.80.4320.3432.33.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMADFREE R-VALUE2.1350.49677490369899.6980.1820.17960.236335.713
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.468-0.0590.8950.577
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.297
r_dihedral_angle_4_deg15.973
r_dihedral_angle_3_deg15.478
r_dihedral_angle_1_deg7.339
r_lrange_it7.215
r_lrange_other7.215
r_scangle_it6.015
r_scangle_other5.996
r_mcangle_it4.515
r_mcangle_other4.514
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.297
r_dihedral_angle_4_deg15.973
r_dihedral_angle_3_deg15.478
r_dihedral_angle_1_deg7.339
r_lrange_it7.215
r_lrange_other7.215
r_scangle_it6.015
r_scangle_other5.996
r_mcangle_it4.515
r_mcangle_other4.514
r_scbond_it4.116
r_scbond_other4.104
r_mcbond_it3.268
r_mcbond_other3.268
r_angle_refined_deg1.788
r_angle_other_deg1.301
r_nbd_refined0.213
r_nbd_other0.193
r_symmetry_nbd_other0.176
r_nbtor_refined0.17
r_xyhbond_nbd_refined0.165
r_symmetry_nbd_refined0.132
r_symmetry_xyhbond_nbd_refined0.119
r_chiral_restr0.082
r_symmetry_nbtor_other0.08
r_symmetry_xyhbond_nbd_other0.017
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9904
Nucleic Acid Atoms
Solvent Atoms425
Heterogen Atoms95

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
SHELXCDphasing
SHELXEmodel building