Navigation Tabs Serial Macromolecular Crystallography at ALBA Synchrotron Light Source - Insulin
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4EY9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 298 insulin was dissolved in 5 mM zinc chloride, 25 mM HCl at a concentration of 5-10 mg/ml. Cuboid-shaped microcrystals were obtained in 35.2 mM sodium citrate pH 7, and 5% (v/v) acetone as precipitant
Crystal Properties Matthews coefficient Solvent content 1.85 33.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.6 α = 90 b = 81.6 β = 90 c = 33.6 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 6M 2019-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 1.27819 ALBA XALOC
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 LCP Injector injection
Data Reduction Diffraction ID Frames Indexed Crystal Hits Frames Indexed Latices Merged 1
Injection Diffraction ID Description Flow Rate Injector Diameter Injection Power Injector Nozzle Filter Size Carrier Solvent 1 undefined (µl/min) undefined (µm)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30.3 100 0.9789 7.9 1292 9140 29.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 100 0.36711 1.5 881
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4EY9 1.71 24.35 8163 908 99.68 0.24199 0.24014 0.24 0.25774 0.26 RANDOM 33.509
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.2 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.576 r_dihedral_angle_4_deg 14.889 r_dihedral_angle_3_deg 13.568 r_dihedral_angle_1_deg 5.769 r_long_range_B_refined 1.626 r_long_range_B_other 1.626 r_angle_refined_deg 1.077 r_mcangle_it 1.022 r_mcangle_other 1.021 r_angle_other_deg 0.993
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.576 r_dihedral_angle_4_deg 14.889 r_dihedral_angle_3_deg 13.568 r_dihedral_angle_1_deg 5.769 r_long_range_B_refined 1.626 r_long_range_B_other 1.626 r_angle_refined_deg 1.077 r_mcangle_it 1.022 r_mcangle_other 1.021 r_angle_other_deg 0.993 r_scangle_other 0.813 r_mcbond_other 0.642 r_mcbond_it 0.641 r_scbond_it 0.54 r_scbond_other 0.539 r_chiral_restr 0.05 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 808 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction Aimless data scaling MOLREP phasing
