NMR structure of the zeta-subunit of the F1F0-ATPase from Sinorhizobium meliloti
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.0 mM [U-13C; U-15N] zeta-subunit | 95% H2O/5% D2O | 75 mM | 6.8 | 1 atm | 293 | Bruker AVANCE III HD 800 |
2 | 5D APSY CBCACONH | 1.0 mM [U-13C; U-15N] zeta-subunit | 95% H2O/5% D2O | 75 mM | 6.8 | 1 atm | 293 | Bruker AVANCE III HD 800 |
3 | 4D APSY HACANH | 1.0 mM [U-13C; U-15N] zeta-subunit | 95% H2O/5% D2O | 75 mM | 6.8 | 1 atm | 293 | Bruker AVANCE III HD 800 |
4 | 5D APSY HACACONH | 1.0 mM [U-13C; U-15N] zeta-subunit | 95% H2O/5% D2O | 75 mM | 6.8 | 1 atm | 293 | Bruker AVANCE III HD 800 |
5 | 3D 1H-13C NOESY aromatic | 1.0 mM [U-13C; U-15N] zeta-subunit | 95% H2O/5% D2O | 75 mM | 6.8 | 1 atm | 293 | Bruker AVANCE III HD 800 |
7 | 3D 1H-13C NOESY aliphatic | 1.0 mM [U-13C; U-15N] zeta-subunit | 95% H2O/5% D2O | 75 mM | 6.8 | 1 atm | 293 | Bruker AVANCE III HD 800 |
6 | 3D 1H-15N NOESY | 1.0 mM [U-13C; U-15N] zeta-subunit | 95% H2O/5% D2O | 75 mM | 6.8 | 1 atm | 293 | Bruker AVANCE III HD 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III HD | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | GROMACS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | UNIO | Torsten Herrmann | |
2 | collection | TopSpin | Bruker Biospin | |
3 | structure calculation | UNIO | Torsten Herrmann | |
4 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
5 | refinement | GROMACS | John Kerrigan | |
6 | data analysis | CARA | Keller and Wuthrich |