8PYN

Human IGF1R with inhibitor 56

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		IGF1R

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	0.1 M HEPES pH 7.5-8.5, 9-12 % PEG3350, 5 mM CoCl2, 5 mM CdCl2, 5 mM MgCl2, and 5 mM NiCl2

Crystal Properties
Matthews coefficient	Solvent content
2.32	46.9

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 69.128	α = 90
b = 69.128	β = 90
c = 142.382	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2017-05-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X10SA	0.999	SLS	X10SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.71	71.19	88.9	0.05	29.1	12.6		34057

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.71	1.8			0.91

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.71	62.186	33971	1697	89.037	0.17	0.1682	0.2087	39.482

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.743			1.743		-3.486

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.197
r_dihedral_angle_3_deg	15.956
r_dihedral_angle_4_deg	14.517
r_dihedral_angle_1_deg	7.122
r_lrange_it	6.601
r_lrange_other	6.483
r_scangle_it	3.619
r_scangle_other	3.618
r_mcangle_it	2.706
r_mcangle_other	2.706
r_scbond_it	2.329
r_scbond_other	2.328
r_angle_refined_deg	2.065
r_mcbond_it	1.681
r_mcbond_other	1.678
r_angle_other_deg	1.522
r_nbd_refined	0.218
r_nbd_other	0.195
r_symmetry_nbd_other	0.179
r_nbtor_refined	0.177
r_xyhbond_nbd_refined	0.161
r_symmetry_nbd_refined	0.126
r_chiral_restr	0.107
r_symmetry_xyhbond_nbd_refined	0.094
r_symmetry_nbtor_other	0.087
r_metal_ion_refined	0.063
r_bond_refined_d	0.016
r_gen_planes_refined	0.013
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2175
Nucleic Acid Atoms
Solvent Atoms	167
Heterogen Atoms	35

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing