X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7CAM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29320% PEG 3350, 0.1 mM benzamidine hydrochloride, 200 mM potassium formate
Crystal Properties
Matthews coefficientSolvent content
1.9938.25

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.26α = 90
b = 53.1β = 102.54
c = 44.63γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2022-10-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.9184BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5247.95900.9911.72.4536271
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.521.610.3430.55

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.847.94421969109990.2590.1520.14820.227620.731
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.356-2.1962.736-1.924
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.075
r_dihedral_angle_6_deg15.366
r_dihedral_angle_2_deg14.097
r_dihedral_angle_1_deg7.968
r_rigid_bond_restr6.062
r_lrange_it4.344
r_lrange_other4.28
r_scangle_it3.509
r_scangle_other3.283
r_mcangle_it2.945
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.075
r_dihedral_angle_6_deg15.366
r_dihedral_angle_2_deg14.097
r_dihedral_angle_1_deg7.968
r_rigid_bond_restr6.062
r_lrange_it4.344
r_lrange_other4.28
r_scangle_it3.509
r_scangle_other3.283
r_mcangle_it2.945
r_mcangle_other2.944
r_scbond_it2.722
r_scbond_other2.552
r_mcbond_it2.194
r_mcbond_other2.194
r_angle_refined_deg2.107
r_angle_other_deg0.999
r_nbd_refined0.204
r_xyhbond_nbd_refined0.175
r_nbtor_refined0.166
r_symmetry_nbd_other0.154
r_nbd_other0.128
r_symmetry_xyhbond_nbd_refined0.119
r_chiral_restr0.111
r_symmetry_nbd_refined0.105
r_symmetry_nbtor_other0.072
r_bond_refined_d0.015
r_gen_planes_refined0.014
r_bond_other_d0.006
r_gen_planes_other0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2321
Nucleic Acid Atoms
Solvent Atoms175
Heterogen Atoms21

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing