PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 1GC3 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1GC3_PLP_G_3413Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1GC3_PLP_G_3413Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1GC3_PLP_G_3413Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
1GC3_PLP_G_3413 73% 2% 0.133 0.9723.61 3.31 7 112094%1
1GC3_PLP_F_2913 72% 6% 0.136 0.9723.43 1.58 5 50094%1
1GC3_PLP_D_1913 66% 1% 0.15 0.9663.53 3.67 7 62094%1
1GC3_PLP_B_913 63% 2% 0.174 0.9814.46 2.48 7 83094%1
1GC3_PLP_H_3913 56% 4% 0.171 0.9564.23 1.61 8 42094%1
1GC3_PLP_C_1413 53% 1% 0.173 0.9452.08 6.04 7 114094%1
1GC3_PLP_E_2413 51% 1% 0.17 0.9361.81 5.67 5 92094%1
1GC3_PLP_A_413 45% 8% 0.198 0.9422.36 2.33 4 52094%1
1GCK_PLP_B_913 80% 21% 0.111 0.9721.52 1.77 3 60094%1
1GC4_PLP_D_1913 71% 8% 0.137 0.9682.72 1.95 4 61094%1
2BIE_PLP_A_1361 100% 38% 0.024 0.9961.23 1.19 1 310100%1
2X3L_PLP_A_1211 100% 19% 0.024 0.9951.74 1.73 2 210100%1
3CEJ_PLP_A_832 100% 41% 0.021 0.9981.23 1.05 1 280100%1
3CEM_PLP_A_832 100% 41% 0.021 0.9971.24 1.04 2 210100%1
4PPM_PLP_A_902 100% 7% 0.019 0.9982.88 1.91 9 600100%1