2D3Y | pdb_00002d3y


DU: 2'-DEOXYURIDINE-5'-MONOPHOSPHATE

DU is a Ligand Of Interest in 2D3Y designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2D3Y_DU_A_221Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2D3Y_DU_A_221Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2D3Y_DU_A_221 1% 11% 0.422 0.5 2.34 1.92 8 710100%1
4KAS_DU_A_301 97% 30% 0.067 0.9821.42 1.37 2 410100%1
8Y1Q_DU_A_201 84% 72% 0.066 0.9270.51 0.57 - 100100%1
6TXR_DU_C_405 84% 71% 0.092 0.9620.53 0.59 - -1095%1
4P9C_DU_B_203 82% 3% 0.114 0.973.44 2.61 15 1410100%1
4KAT_DU_A_301 79% 22% 0.121 0.9671.16 2.04 2 720100%1