Ligand validation:2XDK


XDK: 2-AMINO-4-PYRIDYL-PYRIMIDINE

XDK is a Ligand Of Interest in 2XDK designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2XDK_XDK_A_1226Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2XDK_XDK_A_1226Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2XDK_XDK_A_1226 95% 49% 0.065 0.9681.12 0.86 1 120100%1
7SF4_XDK_A_401 18% 35% 0.215 0.8011.66 0.94 3 140100%0.93