VD3: (1S,3Z)-3-[(2E)-2-[(1R,3AR,7AS)-7A-METHYL-1-[(2R)-6-METHYLHEPTAN-2-YL]-2,3,3A,5,6,7-HEXAHYDRO-1H-INDEN-4-YLIDENE]ETHYLI
DENE]-4-METHYLIDENE-CYCLOHEXAN-1-OL
VD3 is a Ligand Of Interest in 3A50 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3A50_VD3_C_2001 | 7% | 26% | 0.27 | 0.734 | 0.93 | 2.02 | 1 | 10 | 1 | 0 | 100% | 1 |
| 3A50_VD3_D_2001 | 5% | 27% | 0.331 | 0.726 | 1.18 | 1.74 | 3 | 13 | 3 | 0 | 100% | 1 |
| 3A50_VD3_B_2001 | 2% | 24% | 0.361 | 0.604 | 1.03 | 2.05 | 1 | 10 | 3 | 0 | 100% | 1 |
| 3A50_VD3_A_2001 | 1% | 28% | 0.346 | 0.556 | 0.67 | 2.2 | - | 13 | 0 | 0 | 100% | 1 |
| 3A50_VD3_E_2001 | 1% | 19% | 0.403 | 0.591 | 0.93 | 2.49 | - | 14 | 5 | 0 | 100% | 1 |
| 3VRM_VD3_A_502 | 26% | 19% | 0.26 | 0.901 | 0.83 | 2.58 | 1 | 14 | 0 | 0 | 100% | 0.5 |
| 3C6G_VD3_B_700 | 50% | 9% | 0.197 | 0.948 | 1.72 | 2.7 | 5 | 16 | 2 | 0 | 100% | 1 |
| 6T0G_VD3_A_502 | 37% | 16% | 0.126 | 0.873 | 0.93 | 2.73 | - | 11 | 0 | 0 | 71% | 0.7143 |
| 2GJ5_VD3_A_163 | 0% | 1% | 0.672 | 0.638 | 3.15 | 5.5 | 16 | 23 | 4 | 0 | 100% | 0.5 |
