Ligand validation:3GPO


APR: ADENOSINE-5-DIPHOSPHORIBOSE

APR is a Ligand Of Interest in 3GPO designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3GPO_APR_D_161Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3GPO_APR_D_161Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3GPO_APR_D_161 95% 43% 0.071 0.9761.02 1.2 3 410100%1
3GPO_APR_A_161 88% 39% 0.085 0.9620.92 1.44 2 520100%1
3GPO_APR_B_161 87% 40% 0.09 0.9610.96 1.35 3 520100%1
3GPO_APR_C_161 62% 41% 0.147 0.941.05 1.23 3 420100%1
8YN0_APR_A_701 100% 40% 0.032 0.9950.72 1.6 - 61097%0.9236
2FAV_APR_B_477 100% 36% 0.038 0.9850.92 1.58 2 501100%0.9931
7R3D_APR_BBB_401 98% 66% 0.062 0.9830.63 0.69 - 100100%1
3RQ6_APR_A_278 97% 38% 0.06 0.9761.07 1.34 3 400100%1
4EPP_APR_A_501 96% 24% 0.062 0.9711.76 1.34 8 501100%1