4IDQ | pdb_00004idq


GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 4IDQ designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4IDQ_GDP_D_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4IDQ_GDP_D_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4IDQ_GDP_D_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4IDQ_GDP_D_501 91% 40% 0.099 0.9841 1.34 1 510100%1
4IDQ_GDP_B_501 89% 37% 0.102 0.9821 1.45 1 720100%1
4IDQ_GDP_A_501 87% 43% 0.11 0.9840.95 1.27 1 610100%1
4IDQ_GDP_C_501 85% 42% 0.112 0.9760.97 1.27 1 510100%1
3Q5D_GDP_A_3850 98% 40% 0.053 0.9720.96 1.37 2 610100%1
4IDO_GDP_A_501 95% 42% 0.083 0.9861 1.26 1 500100%1
6B9F_GDP_A_506 93% 40% 0.092 0.9891.02 1.33 1 410100%1
7OL3_GDP_A_501 93% 23% 0.088 0.9831.14 2.02 2 900100%1
6B9D_GDP_B_501 87% 43% 0.095 0.9680.86 1.35 - 600100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
8QEG_GDP_A_401 100% 51% 0.031 0.9931.02 0.87 3 100100%1
8QEH_GDP_A_405 100% 55% 0.03 0.9930.89 0.85 1 100100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1