Ligand validation:5X5Q


D16: TOMUDEX

D16 is a Ligand Of Interest in 5X5Q designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5X5Q_D16_A_402Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5X5Q_D16_A_402Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5X5Q_D16_A_402Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5X5Q_D16_A_402 43% 14% 0.183 0.9071.99 1.84 14 400100%1
5X5Q_D16_C_402 40% 12% 0.192 0.9051.91 2.21 4 1410100%1
5X5Q_D16_D_402 30% 15% 0.217 0.8791.74 2.06 4 1110100%1
5X5Q_D16_E_402 29% 12% 0.223 0.8811.93 2.17 5 1210100%1
5X5Q_D16_F_402 27% 17% 0.228 0.8741.98 1.64 6 910100%1
5X5Q_D16_B_402 26% 12% 0.217 0.8581.91 2.15 11 1300100%1
6ZXO_D16_B_401 74% 29% 0.125 0.9541.42 1.44 3 520100%1
1HVY_D16_D_417 63% 7% 0.122 0.9171.84 2.91 5 1110100%1
1I00_D16_A_315 16% 13% 0.221 0.7871.97 2.02 8 1120100%1
7XYK_D16_D_302 89% 73% 0.076 0.9560.36 0.68 - 100100%1
4EB4_D16_A_402 79% 24% 0.086 0.9311.45 1.68 4 710100%1
8GKF_D16_B_301 72% 52% 0.131 0.9540.76 1.09 - 200100%1
3NRR_D16_A_530 71% 29% 0.112 0.9331.59 1.28 5 200100%1