Ligand validation:6Y4M

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 6Y4M designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
6Y4M_GDP_B_1001	70%	47%	0.152	0.971	0.92	1.13	-	4	0	0	100%	1
9F07_GDP_F_501	100%	59%	0.042	0.986	0.78	0.79	-	1	1	0	100%	1
9FYD_GDP_B_501	97%	48%	0.057	0.974	0.96	1.03	1	3	0	0	100%	1
8WMU_GDP_B_501	96%	42%	0.067	0.976	0.97	1.27	1	3	0	0	100%	1
5YL2_GDP_B_501	96%	49%	0.081	0.989	0.9	1.08	1	2	0	0	100%	1
8R6O_GDP_B_501	96%	47%	0.067	0.974	0.95	1.11	1	3	1	0	100%	1
1RRG_GDP_A_183	100%	17%	0.036	0.997	2.05	1.56	7	3	0	0	100%	1
2CXX_GDP_B_2401	100%	29%	0.031	0.989	1.26	1.57	1	3	0	0	100%	1
4LUC_GDP_A_204	100%	40%	0.036	0.992	1.22	1.11	2	2	0	0	100%	1
5YMX_GDP_A_301	100%	54%	0.038	0.994	0.92	0.85	1	-	2	0	100%	1
8V3A_GDP_B_201	100%	42%	0.036	0.991	1.1	1.14	1	2	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.