GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 6Y4M designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 6Y4M_GDP_B_1001 | 70% | 47% | 0.152 | 0.971 | 0.92 | 1.13 | - | 4 | 0 | 0 | 100% | 1 |
| 9FYD_GDP_B_501 | 97% | 48% | 0.057 | 0.974 | 0.96 | 1.03 | 1 | 3 | 0 | 0 | 100% | 1 |
| 8WMU_GDP_B_501 | 96% | 42% | 0.067 | 0.976 | 0.97 | 1.27 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5YL2_GDP_B_501 | 96% | 49% | 0.081 | 0.989 | 0.9 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 8QL8_GDP_B_501 | 95% | 58% | 0.058 | 0.962 | 0.88 | 0.73 | 1 | 1 | 0 | 0 | 100% | 1 |
| 6S8K_GDP_B_502 | 95% | 4% | 0.064 | 0.967 | 4.16 | 1.48 | 15 | 5 | 1 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
