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2YQB \| pdb_00002yqb	Download File View File

Structure of P93A variant of three-domain heme-Cu nitrite reductase from Ralstonia pickettii at 1.4 A resolution

Antonyuk, S.V., Han, C., Eady, R.R., Hasnain, S.S.

(2013) Nature 496: 123-126

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Ralstonia pickettii 12J
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, HEC

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3P0W \| pdb_00003p0w	Download File View File

Crystal structure of D-Glucarate dehydratase from Ralstonia solanacearum complexed with Mg and D-glucarate

Fedorov, A.A., Fedorov, E.V., Gerlt, J.A., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2010-10-13
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Ralstonia pickettii 12J
Macromolecule	Mandelate racemase/muconate lactonizing protein (protein)
Unique Ligands	GKR, MG

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3RR1 \| pdb_00003rr1	Download File View File

Crystal structure of enolase PRK14017 (target EFI-500653) from Ralstonia pickettii 12J

Patskovsky, Y., Hillerich, B., Seidel, R.D., Zencheck, W.D., Toro, R., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Ralstonia pickettii 12J
Macromolecule	Putative D-galactonate dehydratase (protein)
Unique Ligands	CL, MLT

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3RRA \| pdb_00003rra	Download File View File

Crystal structure of enolase PRK14017 (target EFI-500653) from Ralstonia pickettii 12J with magnesium bound

Patskovsky, Y., Ramagopal, U.A., Hillerich, B., Seidel, R.D., Zencheck, W.D., Toro, R., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Ralstonia pickettii 12J
Macromolecule	Putative D-galactonate dehydratase (protein)
Unique Ligands	CL, MG

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3ZBM \| pdb_00003zbm	Download File View File

Structure of M92A variant of three-domain heme-Cu nitrite reductase from Ralstonia pickettii

Antonyuk, S.V., Han, C., Eady, R.R., Hasnain, S.S.

(2013) Nature 496: 123-126

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Ralstonia pickettii 12J
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, HEC

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3ZIY \| pdb_00003ziy	Download File View File

Structure of three-domain heme-Cu nitrite reductase from Ralstonia pickettii at 1.01 A resolution

Antonyuk, S.V., Han, C., Eady, R.R., Hasnain, S.S.

(2013) Nature 496: 123-126

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.01 Å
Organisms	Ralstonia pickettii 12J
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, HEC

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4AX3 \| pdb_00004ax3	Download File View File

Structure of three-domain heme-Cu nitrite reductase from Ralstonia pickettii at 1.6 A resolution

Antonyuk, S.V., Cong, H., Eady, R.R., Hasnain, S.S.

(2013) Nature 496: 123-126

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Ralstonia pickettii 12J
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, HEC

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AF_AFB2U6Q7F1	Download File

Computed structure model of Glutamate-1-semialdehyde 2,1-aminomutase

AlphaFold DB	AF-B2U6Q7-F1
pLDDT (global)	96
Organisms	Ralstonia pickettii 12J
Macromolecule	Glutamate-1-semialdehyde 2,1-aminomutase (protein)

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AF_AFB2U6V1F1	Download File

Computed structure model of Acetyl-coenzyme A synthetase

AlphaFold DB	AF-B2U6V1-F1
pLDDT (global)	92.77
Organisms	Ralstonia pickettii 12J
Macromolecule	Acetyl-coenzyme A synthetase (protein)

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AF_AFB2U6V5F1	Download File

Computed structure model of Glutamate racemase

AlphaFold DB	AF-B2U6V5-F1
pLDDT (global)	92.48
Organisms	Ralstonia pickettii 12J
Macromolecule	Glutamate racemase (protein)

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AF_AFB2U6Y7F1	Download File

Computed structure model of Tryptophan synthase alpha chain

AlphaFold DB	AF-B2U6Y7-F1
pLDDT (global)	94.15
Organisms	Ralstonia pickettii 12J
Macromolecule	Tryptophan synthase alpha chain (protein)

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AF_AFB2U6Z0F1	Download File

Computed structure model of N-(5'-phosphoribosyl)anthranilate isomerase

AlphaFold DB	AF-B2U6Z0-F1
pLDDT (global)	90.79
Organisms	Ralstonia pickettii 12J
Macromolecule	N-(5'-phosphoribosyl)anthranilate isomerase (protein)

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AF_AFB2U6Z1F1	Download File

Computed structure model of tRNA pseudouridine synthase A

AlphaFold DB	AF-B2U6Z1-F1
pLDDT (global)	95.83
Organisms	Ralstonia pickettii 12J
Macromolecule	tRNA pseudouridine synthase A (protein)

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AF_AFB2U705F1	Download File

Computed structure model of Malate dehydrogenase

AlphaFold DB	AF-B2U705-F1
pLDDT (global)	97.36
Organisms	Ralstonia pickettii 12J
Macromolecule	Malate dehydrogenase (protein)

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AF_AFB2U764F1	Download File

Computed structure model of Thiazole synthase

AlphaFold DB	AF-B2U764-F1
pLDDT (global)	91.17
Organisms	Ralstonia pickettii 12J
Macromolecule	Thiazole synthase (protein)

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AF_AFB2U774F1	Download File

Computed structure model of Adenosylhomocysteinase

AlphaFold DB	AF-B2U774-F1
pLDDT (global)	96.29
Organisms	Ralstonia pickettii 12J
Macromolecule	Adenosylhomocysteinase (protein)

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AF_AFB2U793F1	Download File

Computed structure model of Protease HtpX homolog

AlphaFold DB	AF-B2U793-F1
pLDDT (global)	89.26
Organisms	Ralstonia pickettii 12J
Macromolecule	Protease HtpX homolog (protein)

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AF_AFB2U795F1	Download File

Computed structure model of Methionyl-tRNA formyltransferase

AlphaFold DB	AF-B2U795-F1
pLDDT (global)	96.14
Organisms	Ralstonia pickettii 12J
Macromolecule	Methionyl-tRNA formyltransferase (protein)

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AF_AFB2U7A8F1	Download File

Computed structure model of UPF0301 protein Rpic_0619

AlphaFold DB	AF-B2U7A8-F1
pLDDT (global)	88.43
Organisms	Ralstonia pickettii 12J
Macromolecule	UPF0301 protein Rpic_0619 (protein)

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AF_AFB2U7A9F1	Download File

Computed structure model of Putative pre-16S rRNA nuclease

AlphaFold DB	AF-B2U7A9-F1
pLDDT (global)	80.29
Organisms	Ralstonia pickettii 12J
Macromolecule	Putative pre-16S rRNA nuclease (protein)

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AF_AFB2U7B1F1	Download File

Computed structure model of Aspartate carbamoyltransferase

AlphaFold DB	AF-B2U7B1-F1
pLDDT (global)	92.85
Organisms	Ralstonia pickettii 12J
Macromolecule	Aspartate carbamoyltransferase (protein)

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AF_AFB2U7E0F1	Download File

Computed structure model of Undecaprenyl-diphosphatase

AlphaFold DB	AF-B2U7E0-F1
pLDDT (global)	92.42
Organisms	Ralstonia pickettii 12J
Macromolecule	Undecaprenyl-diphosphatase (protein)

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AF_AFB2U7E2F1	Download File

Computed structure model of tRNA (guanine-N(7)-)-methyltransferase

AlphaFold DB	AF-B2U7E2-F1
pLDDT (global)	87.57
Organisms	Ralstonia pickettii 12J
Macromolecule	tRNA (guanine-N(7)-)-methyltransferase (protein)

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AF_AFB2U7E6F1	Download File

Computed structure model of 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

AlphaFold DB	AF-B2U7E6-F1
pLDDT (global)	93.94
Organisms	Ralstonia pickettii 12J
Macromolecule	3-octaprenyl-4-hydroxybenzoate carboxy-lyase (protein)

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AF_AFB2U7E9F1	Download File

Computed structure model of Transcription antitermination protein NusB

AlphaFold DB	AF-B2U7E9-F1
pLDDT (global)	92.42
Organisms	Ralstonia pickettii 12J
Macromolecule	Transcription antitermination protein NusB (protein)

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Structure Determination Methodology

CSM Source Database

pLDDT Global Quality Score

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2YQB | pdb_00002yqb

3P0W | pdb_00003p0w

3RR1 | pdb_00003rr1

3RRA | pdb_00003rra

3ZBM | pdb_00003zbm

3ZIY | pdb_00003ziy

4AX3 | pdb_00004ax3