RCSB PDB: Search

1E0D \| pdb_00001e0d	Download File View File

UDP-N-Acetylmuramoyl-L-Alanine:D-Glutamate Ligase

Fanchon, E., Bertrand, J., Chantalat, L., Dideberg, O.

(2000) J Mol Biology 301: 1257

Released	2000-06-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	SO4

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1EEH \| pdb_00001eeh	Download File View File

UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE

Bertrand, J.A., Fanchon, E., Martin, L., Chantalat, L., Auger, G., Blanot, D., van Heijenoort, J., Dideberg, O.

(2000) J Mol Biology 301: 1257-1266

Released	2001-01-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE (protein)
Unique Ligands	UMA

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1UAG \| pdb_00001uag	Download File View File

UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE

Bertrand, J., Fanchon, E., Dideberg, O.

(1997) EMBO J 16: 3416-3425

Released	1998-03-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYL-L-ALANINE/:D-GLUTAMATE LIGASE (protein)
Unique Ligands	SO4, UMA

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2JFF \| pdb_00002jff	Download File View File

Crystal structure of MurD ligase in complex with D-Glu containing sulfonamide inhibitor

Kotnik, M., Humljan, J., Contreras-Martel, C., Oblak, M., Kristan, K., Herve, M., Blanot, D., Urleb, U., Gobec, S., Dessen, A., Solmajer, T.

(2007) J Mol Biology 370: 107

Released	2007-05-15
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	LK2, SO4

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2JFG \| pdb_00002jfg	Download File View File

Crystal structure of MurD ligase in complex with UMA and ADP

Kotnik, M., Humljan, J., Contreras-Martel, C., Oblak, M., Kristan, K., Herve, M., Blanot, D., Urleb, U., Gobec, S., Dessen, A., Solmajer, T.

(2007) J Mol Biology 370: 107-115

Released	2007-05-15
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	ADP, SO4, UMA

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2JFH \| pdb_00002jfh	Download File View File

Crystal structure of MurD ligase in complex with L-Glu containing sulfonamide inhibitor

Kotnik, M., Humljan, J., Contreras-Martel, C., Oblak, M., Kristan, K., Herve, M., Blanot, D., Urleb, U., Gobec, S., Dessen, A., Solmajer, T.

(2007) J Mol Biology 370: 107

Released	2007-05-15
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYL-ALANINE-D-GLUTAMATE LIGASE (protein)
Unique Ligands	LK1, SO4

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2UAG \| pdb_00002uag	Download File View File

UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE

Bertrand, J., Fanchon, E., Dideberg, O.

(1999) J Mol Biology 289: 579-590

Released	2000-02-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE) (protein)
Unique Ligands	ADP, MG, UMA

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2UUO \| pdb_00002uuo	Download File View File

Crystal structure of MurD ligase in complex with D-Glu containing sulfonamide inhibitor

Humljan, J., Kotnik, M., Contreras-Martel, C., Blanot, D., Urleb, U., Dessen, A., Solmajer, T., Gobec, S.

(2008) J Med Chem 51: 7486-7494

Released	2008-03-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	LK3, SO4

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2UUP \| pdb_00002uup	Download File View File

Crystal structure of MurD ligase in complex with D-Glu containing sulfonamide inhibitor

Humljan, J., Kotnik, M., Contreras-Martel, C., Blanot, D., Urleb, U., Dessen, A., Solmajer, T., Gobec, S.

(2008) J Med Chem 51: 7486-7494

Released	2008-03-25
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	LK4, SO4

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2VTD \| pdb_00002vtd	Download File View File

Crystal structure of MurD ligase in complex with D-Glu containing sulfonamide inhibitor

Humljan, J., Kotnik, M., Contreras-Martel, C., Blanot, D., Urleb, U., Dessen, A., Solmajer, T., Gobec, S.

(2008) J Med Chem 51: 7486-7494

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	LKM, SO4

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2VTE \| pdb_00002vte	Download File View File

Crystal structure of MurD ligase in complex with D-Glu containing sulfonamide inhibitor

Humljan, J., Kotnik, M., Contreras-Martel, C., Blanot, D., Urleb, U., Dessen, A., Solmajer, T., Gobec, S.

(2008) J Med Chem 51: 7486-7494

Released	2008-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	IK4, SO4

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2WJP \| pdb_00002wjp	Download File View File

CRYSTAL STRUCTURE OF MURD LIGASE IN COMPLEX WITH D-GLU CONTAINING RHODANINE INHIBITOR

Tomasic, T., Zidar, N., Sink, R., Kovac, A., Rupnik, V., Turk, S., Contreras-Martel, C., Dessen, A., Blanot, D., Muller-Premru, M., Gobec, S., Zega, A., Peterlin-Masic, L., Kikelj, D.

(2010) J Med Chem 53: 6584

Released	2010-08-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	AZI, CL, D17, DMS, SO4

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2X5O \| pdb_00002x5o	Download File View File

Discovery of Novel 5-Benzylidenerhodanine- and 5-Benzylidene- thiazolidine-2,4-dione Inhibitors of MurD Ligase

Zidar, N., Tomasic, T., Sink, R., Rupnik, V., Kovac, A., Turk, S., Contreras-Martel, C., Dessen, A., Blanot, D., Gobec, S., Zega, A., Peterlin-Masic, L., Kikelja, D.

(2010) J Med Chem 53: 6584-6594

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	AZI, CL, SO3, SO4, VSV

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2XPC \| pdb_00002xpc	Download File View File

Second-generation sulfonamide inhibitors of MurD: Activity optimisation with conformationally rigid analogues of D-glutamic acid

Sosic, I., Barreteau, H., Simcic, M., Sink, R., Cesar, J., Golic-Grdadolnik, S., Contreras-Martel, C., Dessen, A., Amoroso, A., Joris, B., Blanot, D., Gobec, S.

(2011) Eur J Med Chem 46: 2880

Released	2011-05-18
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	051, CL, DMS, SO4

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2Y1O \| pdb_00002y1o	Download File View File

Dual-target Inhibitor of MurD and MurE Ligases: Design, Synthesis and Binding Mode Studies

Tomasic, T., Sink, R., Kovac, A., Turk, S., Contreras-Martel, C., Dessen, A., Blanot, D., Gobec, S., Zega, A., Kikelj, D., Peterlin-Masic, L.

(2012) ACS Med Chem Lett 3: 626-630

Released	2011-12-28
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Escherichia coli DH5[alpha]
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	DMS, SO4, T26

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2Y66 \| pdb_00002y66	Download File View File

New 5-Benzylidenethiazolidine-4-one Inhibitors of Bacterial MurD Ligase: Design, Synthesis, Crystal Structures, and Biological Evaluation

Zidar, N., Tomasic, T., Sink, R., Kovac, A., Patin, D., Blanot, D., Contreras-Martel, C., Dessen, A., Muller-Premru, M., Zega, A., Gobec, S., Peterlin-Masic, L., Kikelj, D.

(2011) Eur J Med Chem 46: 5512

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Escherichia coli K-12
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	CL, DMS, N04, SO3, SO4

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2Y67 \| pdb_00002y67	Download File View File

New 5-Benzylidenethiazolidine-4-one Inhibitors of Bacterial MurD Ligase: Design, Synthesis, Crystal Structures, and Biological Evaluation

Zidar, N., Tomasic, T., Sink, R., Kovac, A., Patin, D., Blanot, D., Contreras-Martel, C., Dessen, A., Muller-Premru, M., Zega, A., Gobec, S., Peterlin-Masic, L., Kikelj, D.

(2011) Eur J Med Chem 46: 5512

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli K-12
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	N21, SO4

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2Y68 \| pdb_00002y68	Download File View File

Structure-based design of a new series of D-glutamic acid-based inhibitors of bacterial MurD ligase

Tomasic, T., Zidar, N., Sink, R., Kovac, A., Patin, D., Blanot, D., Contreras-Martel, C., Dessen, A., Muller-Premru, M., Zega, A., Gobec, S., Peterlin-Masic, L., Kikelj, D.

(2011) J Med Chem 54: 4600-4610

Released	2011-06-08
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Escherichia coli K-12
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	AZI, CL, DMS, SO4, T04

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3LK7 \| pdb_00003lk7	Download File View File

The Crystal Structure of UDP-N-acetylmuramoylalanine-D-glutamate (MurD) ligase from Streptococcus agalactiae to 1.5A

Stein, A.J., Sather, A., Shakelford, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus agalactiae serogroup V
Macromolecule	UDP-N-acetylmuramoylalanine--D-glutamate ligase (protein)
Unique Ligands	CL, SO4

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3UAG \| pdb_00003uag	Download File View File

UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE

Bertrand, J.A., Auger, G., Martin, L., Fanchon, E., Blanot, D., Le Beller, D., Van Heijenoort, J., Dideberg, O.

(1999) J Mol Biology 289: 579-590

Released	2000-02-25
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE) (protein)
Unique Ligands	ADP, EPE, MN, UMA

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4BUC \| pdb_00004buc	Download File View File

CRYSTAL STRUCTURE OF MURD LIGASE FROM THERMOTOGA MARITIMA IN APO FORM

Favini-Stabile, S., Contreras-Martel, C., Thielens, N., Dessen, A.

(2013) Environ Microbiol 15: 3218

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Thermotoga maritima
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	CL, GOL, NH4, PO3, PO4

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4UAG \| pdb_00004uag	Download File View File

UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE

Bertrand, J., Auger, G., Martin, L., Fanchon, E., Blanot, D., Le Beller, D., Van Heijenoort, J., Dideberg, O.

(1999) J Mol Biology 289: 579-590

Released	2000-03-15
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE (protein)
Unique Ligands	SO4, UAG, UNX

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5A5E \| pdb_00005a5e	Download File View File

CRYSTAL STRUCTURE OF MURD LIGASE FROM ESCHERICHIA COLI

Sink, R., Kotnik, M., Zega, A., Barreteau, H., Gobec, S., Blanot, D., Dessen, A., Contreras-Martel, C.

(2016) PLoS One 11: e0152075-e0152075

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Escherichia coli K-12
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	MPD, NI, SO4

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5A5F \| pdb_00005a5f	Download File View File

CRYSTAL STRUCTURE OF MURD LIGASE FROM ESCHERICHIA COLI IN COMPLEX WITH UMA AND ADP

Sink, R., Kotnik, M., Zega, A., Barreteau, H., Gobec, S., Blanot, D., Dessen, A., Contreras-Martel, C.

(2016) PLoS One 11: e0152075-e0152075

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (protein)
Unique Ligands	ADP, MLI, UMA

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7SIR \| pdb_00007sir	Download File View File

Crystal Structure of UDP-N-acetylmuramoylalanine-D-glutamate ligase from Acinetobacter baumannii AB5075-UW

Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Acinetobacter baumannii AB307-0294
Macromolecule	UDP-N-acetylmuramoylalanine--D-glutamate ligase (protein)
Unique Ligands	FMT

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1E0D | pdb_00001e0d

1EEH | pdb_00001eeh

1UAG | pdb_00001uag

2JFF | pdb_00002jff

2JFG | pdb_00002jfg

2JFH | pdb_00002jfh

2UAG | pdb_00002uag

2UUO | pdb_00002uuo

2UUP | pdb_00002uup

2VTD | pdb_00002vtd

2VTE | pdb_00002vte

2WJP | pdb_00002wjp

2X5O | pdb_00002x5o

2XPC | pdb_00002xpc

2Y1O | pdb_00002y1o

2Y66 | pdb_00002y66

2Y67 | pdb_00002y67

2Y68 | pdb_00002y68

3LK7 | pdb_00003lk7

3UAG | pdb_00003uag

4BUC | pdb_00004buc

4UAG | pdb_00004uag

5A5E | pdb_00005a5e

5A5F | pdb_00005a5f

7SIR | pdb_00007sir